1 Response_reg#1
4-111 aa · 108 aa · 49.1% of protein
Raw token
Response_reg:4:4.35e-33:111:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAVO_RS01290
Response regulator OmpR family
Bacillus anthracis str. Vollum · GCF_000167275
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000167275#BAVO_RS01290Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 220 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:2.11e-23:218:77:77- Raw architecture: Response_reg:4:4.35e-33:111:112:111#Trans_reg_C:144:2.11e-23:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000167275::NZ_AAEP01000009.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19908-21919Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000167275::NZ_AAEP01000009.1::G00057Context members
BAVO_RS01290BAVO_RS01295
Partner locus tags
BAVO_RS01290BAVO_RS01295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000101081.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8P4V1Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8P4V1_BACANDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAVO_RS01290Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AAEP01000009.1Sequence record reported by the local genomic context database.
Genomic interval19 908-20 570 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 908-21 919 ntGCF_000167275::NZ_AAEP01000009.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000167275::NZ_AAEP01000009.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAEP01000009.1All displayed genes belong to this local TCS context.
Neighborhood span19 908-21 919 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 908 nt21 919 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAVO_RS01290GCF_000167275#BAVO_RS01290
RROmpRCurrent focus
19 908-20 570 nt · Forward (+)
BAVO_RS01295GCF_000167275#BAVO_RS01295
HKClassic
20 558-21 919 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS18310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1722620
Simplified PFAM architecture for RROC_1722620
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1722620
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS18310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 261 591 · GCF_000167275
AssemblyASM16727v1 · Scaffoldhaploid
Genome composition5 488 459 bp · 35,0% GCBacillus anthracis str. Vollum
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key