1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:1.59e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAGC_RS20095
Response regulator OmpR family
Bacillus anthracis str. A1055 · GCF_000167255
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000167255#BAGC_RS20095Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-230 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:155:1.49e-35:230:76:77- Raw architecture: Response_reg:6:1.59e-34:115:111:111#Trans_reg_C:155:1.49e-35:230:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000167255::NZ_AAEO01000030.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42355-44071Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000167255::NZ_AAEO01000030.1::G00017Context members
BAGC_RS20090BAGC_RS20095
Partner locus tags
BAGC_RS20090BAGC_RS20095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000651978.1Primary protein accession used for annex mappings.
UniProt accessionA0A242WD01Primary UniProt accession resolved in the annex database.
UniProt IDA0A242WD01_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAGC_RS20095Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AAEO01000030.1Sequence record reported by the local genomic context database.
Genomic interval43 358-44 071 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 355-44 071 ntGCF_000167255::NZ_AAEO01000030.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000167255::NZ_AAEO01000030.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAEO01000030.1All displayed genes belong to this local TCS context.
Neighborhood span42 355-44 071 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 355 nt44 071 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAGC_RS20090GCF_000167255#BAGC_RS20090
HKClassic
42 355-43 368 nt · Reverse (-)
BAGC_RS20095GCF_000167255#BAGC_RS20095
RROmpRCurrent focus
43 358-44 071 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS01575Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961346
Simplified PFAM architecture for RROC_0961346
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_0961346
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS01575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 280 355 · GCF_000167255
AssemblyASM16725v1 · Scaffoldhaploid
Genome composition5 370 618 bp · 35,5% GCBacillus anthracis str. A1055
Signal transduction countsGenes 96 · HK 48 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key