Gene detail

BAGC_RS16665

Histidine kinase, Classic

Bacillus anthracis str. A1055 · GCF_000167255

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_000167255#BAGC_RS16665Stable P2CS identifier used across views.

GenomeGCF_000167255Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus

Selected clusterHKOC_1114806Run 6 · 6 sequences · id 100% · cov 80% · representative

External referencesWP_000933572.1 · MIST4 BAGC_RS16665RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

GAFHis_kinaseHATPase_c

Protein length589 aaLength used to scale native and Biotite-like views.

Annotated domains33 with usable coordinates.

Domain coverage307 / 589 aa (52.1%)Merged over positioned domains only.

Domain description1 GAF,1 His_kinase,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa589 aa

Domain-by-domain annotation3 items

1 GAF#1

237-360 aa · 124 aa · 21.1% of protein

Raw tokenGAF:237:0.000000128:360:132:133

2 His_kinase#2

375-453 aa · 79 aa · 13.4% of protein

Raw tokenHis_kinase:375:5.86e-30:453:80:80

3 HATPase_c#3

473-576 aa · 104 aa · 17.7% of protein

Raw tokenHATPase_c:473:0.0000000000000246:576:108:109

Raw architecture: GAF:237:0.000000128:360:132:133#His_kinase:375:5.86e-30:453:80:80#HATPase_c:473:0.0000000000000246:576:108:109
Domain description: 1 GAF,1 His_kinase,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_000167255::NZ_AAEO01000026.3::G00026

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span86425-88912Genomic interval covered by the local TCS group.

Identifiers

RefSeq proteinWP_000933572.1

Context group IDGCF_000167255::NZ_AAEO01000026.3::G00026

Context members

BAGC_RS16660BAGC_RS16665

Partner locus tags

BAGC_RS16660BAGC_RS16665

Partner protein IDs

WP_000921829.1 WP_000933572.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_000933572.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBAGC_RS16665Primary locus identifier stored in the genes table.

Old locus tagUnavailableNo previous locus tag available for this gene.

Contig / repliconNZ_AAEO01000026.3Sequence record reported by the local genomic context database.

Genomic interval87 143-88 912 nt1 770 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span86 425-88 912 ntGCF_000167255::NZ_AAEO01000026.3::G00026

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000167255::NZ_AAEO01000026.3::G00026

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_AAEO01000026.3All displayed genes belong to this local TCS context.

Neighborhood span86 425-88 912 nt2 488 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

86 425 nt88 912 nt

+-BAGC_RS16660 BAGC_RS16665

Neighborhood gene cards

2 genes in the current local neighborhood.

BAGC_RS16660GCF_000167255#BAGC_RS16660

RRLytTR

86 425-87 165 nt · Reverse (-)

RefSeq WP_000921829.1

Open gene

BAGC_RS16665GCF_000167255#BAGC_RS16665

HKClassicCurrent focus

87 143-88 912 nt · Reverse (-)

RefSeq WP_000933572.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1114806HK

Run 66 sequencesid 100%cov 80%

PFAM 5TM-5TMR_LYT + GAF + His_kinase + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_1114806Run 6 · HK · 6 sequences

Representative sequenceGCF_000167255#BAGC_RS16665The current gene is the representative for this cluster.

PFAM architecture5TM-5TMR_LYT + GAF + His_kinase + HATPase_c4 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_1114806

Simplified PFAM architecture for HKOC_1114806

PFAM domain coverage: 485 / 589 aa (82.3%)

1 aa589 aa

5TM-5TMR_LYTGAFHis_kinaseHATPase_c

Simplified architecture: 5TM-5TMR_LYT + GAF + His_kinase + HATPase_c
Raw architecture: 5TM-5TMR_LYT[26-204] | GAF[237-359] | His_kinase[375-453] | HATPase_c[473-576]
Domain count: 4
Matched identifier: HKOC_1114806
Positioned domains: 5TM-5TMR_LYT 26-204 ; GAF 237-359 ; His_kinase 375-453 ; HATPase_c 473-576

Cluster members and taxonomy

Representative gene: GCF_000167255#BAGC_RS16665

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 280 355 · GCF_000167255

AssemblyASM16725v1 · Scaffoldhaploid

Genome composition5 370 618 bp · 35,5% GCBacillus anthracis str. A1055

Signal transduction countsGenes 96 · HK 48 · RR 48CheA 1 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key