1 HisKA#1
180-245 aa · 66 aa · 14.9% of protein
Raw token
HisKA:180:0.000000000274:245:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IC22_RS04820
Histidine kinase, Classic
Bifidobacterium longum DJO10A · GCF_000166895
ClassHKTypeClassicLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000166895#IC22_RS04820Stable P2CS identifier used across views.
GenomeGCF_000166895Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 443 aa (40.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
316-428 aa · 113 aa · 25.5% of protein
Raw token
HATPase_c:316:9.09e-29:428:113:109- Raw architecture: HisKA:180:0.000000000274:245:66:64#HATPase_c:316:9.09e-29:428:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000166895::NZ_AABM02000007.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20672-22905Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000166895::NZ_AABM02000007.1::G00010Context members
IC22_RS04820IC22_RS04825
Partner locus tags
IC22_RS04820IC22_RS04825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_010081147.1Primary protein accession used for annex mappings.
UniProt accessionB3DTQ1Primary UniProt accession resolved in the annex database.
UniProt IDB3DTQ1_BIFLDDisplay identifier provided by UniProt.
GO / PubMed4 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIC22_RS04820Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AABM02000007.1Sequence record reported by the local genomic context database.
Genomic interval20 672-22 003 nt1 332 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 672-22 905 ntGCF_000166895::NZ_AABM02000007.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000166895::NZ_AABM02000007.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AABM02000007.1All displayed genes belong to this local TCS context.
Neighborhood span20 672-22 905 nt2 234 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 672 nt22 905 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IC22_RS04820GCF_000166895#IC22_RS04820
HKClassicCurrent focus
20 672-22 003 nt · Forward (+)
IC22_RS04825GCF_000166895#IC22_RS04825
RROmpR
22 201-22 905 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008945#BLD_RS05430Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2041492
Simplified PFAM architecture for HKOC_2041492
PFAM domain coverage: 176 / 443 aa (39.7%)
1 aa443 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_2041492
- Positioned domains: HisKA 180-244 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_000008945#BLD_RS05430
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 4 over 4 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 205 913 · GCF_000166895
AssemblyASM16689v2 · Scaffoldhaploid
Genome composition2 375 285 bp · 60,0% GCBifidobacterium longum DJO10A
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key