1 Response_reg#1
5-114 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:5:3.32e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0219_RS03825
Response regulator OmpR family
Clostridioides difficile NAP07 · GCF_000164655
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164655#HMPREF0219_RS03825Stable P2CS identifier used across views.
GenomeGCF_000164655Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 222 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.4% of protein
Raw token
Trans_reg_C:147:1.02e-29:218:77:77- Raw architecture: Response_reg:5:3.32e-34:114:111:111#Trans_reg_C:147:1.02e-29:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164655::NZ_GG770749.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span599372-601301Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0219_1912RefSeq proteinWP_003424455.1
Context group ID
GCF_000164655::NZ_GG770749.1::G00020Context members
HMPREF0219_RS03830HMPREF0219_RS03825
Partner locus tags
HMPREF0219_RS03830HMPREF0219_RS03825
Partner old locus tags
HMPREF0219_1911HMPREF0219_1912
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003424455.1Primary protein accession used for annex mappings.
UniProt accessionD5Q3K0Primary UniProt accession resolved in the annex database.
UniProt IDD5Q3K0_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0219_RS03825Primary locus identifier stored in the genes table.
Old locus tagHMPREF0219_1912Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG770749.1Sequence record reported by the local genomic context database.
Genomic interval600 633-601 301 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span599 372-601 301 ntGCF_000164655::NZ_GG770749.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164655::NZ_GG770749.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG770749.1All displayed genes belong to this local TCS context.
Neighborhood span599 372-601 301 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
599 372 nt601 301 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0219_RS03830GCF_000164655#HMPREF0219_RS03830
HKClassic
599 372-600 649 nt · Reverse (-)
HMPREF0219_RS03825GCF_000164655#HMPREF0219_RS03825
RROmpRCurrent focus
600 633-601 301 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0210665Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637271
Simplified PFAM architecture for RROC_1637271
PFAM domain coverage: 182 / 222 aa (82.0%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[147-218]
- Domain count: 2
- Matched identifier: RROC_1637271
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 147-218 ; Trans_reg_C 147-218
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0210665
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 2 958 total members. Page 1 / 60.
GCF_000003215#QAC_RS0210665 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 258 · GCF_000164655
AssemblyASM16465v1 · Scaffoldhaploid
Genome composition3 905 466 bp · 28,5% GCClostridioides difficile NAP07
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key