1 Response_reg#1
4-116 aa · 113 aa · 51.8% of protein
Raw token
Response_reg:4:9.59e-38:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9550_RS14415
Response regulator, unclassified
Escherichia coli MS 187-1 · GCF_000164335
ClassRRTypeunclassifiedLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164335#HMPREF9550_RS14415Stable P2CS identifier used across views.
GenomeGCF_000164335Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 218 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 GerE#2
148-204 aa · 57 aa · 26.1% of protein
Raw token
GerE:148:8.84e-21:204:57:57- Raw architecture: Response_reg:4:9.59e-38:116:113:111#GerE:148:8.84e-21:204:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164335::NZ_GG772514.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span89474-90130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9550_01291RefSeq proteinWP_000611328.1
Context group ID
GCF_000164335::NZ_GG772514.1::G00031Context members
HMPREF9550_RS14415
Partner locus tags
HMPREF9550_RS14415
Partner old locus tags
HMPREF9550_01291
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000611328.1Primary protein accession used for annex mappings.
UniProt accessionD3GXG6Primary UniProt accession resolved in the annex database.
UniProt IDD3GXG6_ECO44Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9550_RS14415Primary locus identifier stored in the genes table.
Old locus tagHMPREF9550_01291Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG772514.1Sequence record reported by the local genomic context database.
Genomic interval89 474-90 130 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span89 474-90 130 ntGCF_000164335::NZ_GG772514.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164335::NZ_GG772514.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG772514.1All displayed genes belong to this local TCS context.
Neighborhood span89 474-90 130 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 474 nt90 130 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9550_RS14415GCF_000164335#HMPREF9550_RS14415
RRunclassifiedCurrent focus
89 474-90 130 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006665#Z_RS14090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1811974
Simplified PFAM architecture for RROC_1811974
PFAM domain coverage: 169 / 218 aa (77.5%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1811974
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_000006665#Z_RS14090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 547 · GCF_000164335
AssemblyASM16433v1 · Scaffoldhaploid
Genome composition4 403 159 bp · 51,0% GCEscherichia coli MS 187-1
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key