1 HAMP#1
72-139 aa · 68 aa · 18.6% of protein
Raw token
HAMP:72:0.000000794:139:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9534_RS13200
Histidine kinase, Classic
Escherichia coli MS 69-1 · GCF_000164315
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164315#HMPREF9534_RS13200Stable P2CS identifier used across views.
GenomeGCF_000164315Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 366 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation3 items
2 HisKA#2
147-204 aa · 58 aa · 15.8% of protein
Raw token
HisKA:147:0.00000000938:204:62:643 HATPase_c#3
252-360 aa · 109 aa · 29.8% of protein
Raw token
HATPase_c:252:8.44e-22:360:111:109- Raw architecture: HAMP:72:0.000000794:139:68:69#HisKA:147:0.00000000938:204:62:64#HATPase_c:252:8.44e-22:360:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164315::NZ_GG772400.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113373-115142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9534_02505RefSeq proteinWP_001052129.1
Context group ID
GCF_000164315::NZ_GG772400.1::G00026Context members
HMPREF9534_RS13200HMPREF9534_RS13195
Partner locus tags
HMPREF9534_RS13200HMPREF9534_RS13195
Partner old locus tags
HMPREF9534_02505HMPREF9534_02506
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001052129.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9534_RS13200Primary locus identifier stored in the genes table.
Old locus tagHMPREF9534_02505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG772400.1Sequence record reported by the local genomic context database.
Genomic interval113 373-114 473 nt1 101 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 373-115 142 ntGCF_000164315::NZ_GG772400.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164315::NZ_GG772400.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG772400.1All displayed genes belong to this local TCS context.
Neighborhood span113 373-115 142 nt1 770 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 373 nt115 142 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9534_RS13200GCF_000164315#HMPREF9534_RS13200
HKClassicCurrent focus
113 373-114 473 nt · Reverse (-)
HMPREF9534_RS13195GCF_000164315#HMPREF9534_RS13195
RROmpR
114 474-115 142 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164315#HMPREF9534_RS13200The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2712008
Simplified PFAM architecture for HKOC_2712008
PFAM domain coverage: 213 / 366 aa (58.2%)
1 aa366 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[91-140] | HisKA[147-201] | HATPase_c[252-359]
- Domain count: 3
- Matched identifier: HKOC_2712008
- Positioned domains: HAMP 91-140 ; HisKA 147-201 ; HATPase_c 252-359
Cluster members and taxonomy
Representative gene: GCF_000164315#HMPREF9534_RS13200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 531 · GCF_000164315
AssemblyASM16431v1 · Scaffoldhaploid
Genome composition5 220 755 bp · 50,5% GCEscherichia coli MS 69-1
Signal transduction countsGenes 65 · HK 31 · RR 34CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key