1 Response_reg#1
9-121 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:9:4.32e-36:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9534_RS11325
Response regulator, unclassified
Escherichia coli MS 69-1 · GCF_000164315
ClassRRTypeunclassifiedLength215 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164315#HMPREF9534_RS11325Stable P2CS identifier used across views.
GenomeGCF_000164315Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 215 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 GerE#2
152-208 aa · 57 aa · 26.5% of protein
Raw token
GerE:152:2.14e-25:208:57:57- Raw architecture: Response_reg:9:4.32e-36:121:113:111#GerE:152:2.14e-25:208:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164315::NZ_GG772407.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span59008-59655Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9534_02931RefSeq proteinWP_001113637.1
Context group ID
GCF_000164315::NZ_GG772407.1::G00023Context members
HMPREF9534_RS11325
Partner locus tags
HMPREF9534_RS11325
Partner old locus tags
HMPREF9534_02931
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001113637.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FPF2Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FPF2_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9534_RS11325Primary locus identifier stored in the genes table.
Old locus tagHMPREF9534_02931Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG772407.1Sequence record reported by the local genomic context database.
Genomic interval59 008-59 655 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 008-59 655 ntGCF_000164315::NZ_GG772407.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164315::NZ_GG772407.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG772407.1All displayed genes belong to this local TCS context.
Neighborhood span59 008-59 655 nt648 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 008 nt59 655 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9534_RS11325GCF_000164315#HMPREF9534_RS11325
RRunclassifiedCurrent focus
59 008-59 655 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002486915#BGE27_RS00215Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1883939
Simplified PFAM architecture for RROC_1883939
PFAM domain coverage: 169 / 216 aa (78.2%)
1 aa216 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-121] | GerE[152-207]
- Domain count: 2
- Matched identifier: RROC_1883939
- Positioned domains: Response_reg 9-121 ; Response_reg 9-121 ; GerE 152-207 ; GerE 152-207
Cluster members and taxonomy
Representative gene: GCF_002486915#BGE27_RS00215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 531 · GCF_000164315
AssemblyASM16431v1 · Scaffoldhaploid
Genome composition5 220 755 bp · 50,5% GCEscherichia coli MS 69-1
Signal transduction countsGenes 65 · HK 31 · RR 34CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key