1 GAF#1
226-347 aa · 122 aa · 21.6% of protein
Raw token
GAF:226:0.0000195:347:134:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9534_RS08855
Histidine kinase, Classic
Escherichia coli MS 69-1 · GCF_000164315
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164315#HMPREF9534_RS08855Stable P2CS identifier used across views.
GenomeGCF_000164315Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
GAFHis_kinaseHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 565 aa (52.7%)Merged over positioned domains only.
Domain description1 GAF,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation3 items
2 His_kinase#2
359-438 aa · 80 aa · 14.2% of protein
Raw token
His_kinase:359:1.87e-31:438:81:803 HATPase_c#3
456-551 aa · 96 aa · 17.0% of protein
Raw token
HATPase_c:456:0.0000000000404:551:103:109- Raw architecture: GAF:226:0.0000195:347:134:133#His_kinase:359:1.87e-31:438:81:80#HATPase_c:456:0.0000000000404:551:103:109
- Domain description: 1 GAF,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164315::NZ_GG772424.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18747-21193Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9534_03492RefSeq proteinWP_000544368.1
Context group ID
GCF_000164315::NZ_GG772424.1::G00016Context members
HMPREF9534_RS08855HMPREF9534_RS08850
Partner locus tags
HMPREF9534_RS08855HMPREF9534_RS08850
Partner old locus tags
HMPREF9534_03492HMPREF9534_03493
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000544368.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9534_RS08855Primary locus identifier stored in the genes table.
Old locus tagHMPREF9534_03492Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG772424.1Sequence record reported by the local genomic context database.
Genomic interval18 747-20 444 nt1 698 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 747-21 193 ntGCF_000164315::NZ_GG772424.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164315::NZ_GG772424.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG772424.1All displayed genes belong to this local TCS context.
Neighborhood span18 747-21 193 nt2 447 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 747 nt21 193 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9534_RS08855GCF_000164315#HMPREF9534_RS08855
HKClassicCurrent focus
18 747-20 444 nt · Forward (+)
HMPREF9534_RS08850GCF_000164315#HMPREF9534_RS08850
RRLytTR
20 459-21 193 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164315#HMPREF9534_RS08855The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + GAF + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1234082
Simplified PFAM architecture for HKOC_1234082
PFAM domain coverage: 461 / 565 aa (81.6%)
1 aa565 aa
5TM-5TMR_LYTGAFHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + GAF + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[28-192] | GAF[226-343] | His_kinase[359-438] | HATPase_c[456-553]
- Domain count: 4
- Matched identifier: HKOC_1234082
- Positioned domains: 5TM-5TMR_LYT 28-192 ; GAF 226-343 ; His_kinase 359-438 ; HATPase_c 456-553
Cluster members and taxonomy
Representative gene: GCF_000164315#HMPREF9534_RS08855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 531 · GCF_000164315
AssemblyASM16431v1 · Scaffoldhaploid
Genome composition5 220 755 bp · 50,5% GCEscherichia coli MS 69-1
Signal transduction countsGenes 65 · HK 31 · RR 34CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key