1 Response_reg#1
4-113 aa · 110 aa · 52.9% of protein
Raw token
Response_reg:4:1.03e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9540_RS03150
Response regulator OmpR family
Escherichia coli MS 115-1 · GCF_000164235
ClassRRTypeOmpRLength208 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164235#HMPREF9540_RS03150Stable P2CS identifier used across views.
GenomeGCF_000164235Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 208 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-208 aa · 61 aa · 29.3% of protein
Raw token
Trans_reg_C:148:2.92e-20:208:61:77- Raw architecture: Response_reg:4:1.03e-38:113:111:111#Trans_reg_C:148:2.92e-20:208:61:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164235::NZ_GG771858.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5247-8550Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9540_04415RefSeq proteinWP_001325477.1
Context group ID
GCF_000164235::NZ_GG771858.1::G00007Context members
HMPREF9540_RS03155HMPREF9540_RS03150
Partner locus tags
HMPREF9540_RS03155HMPREF9540_RS03150
Partner old locus tags
HMPREF9540_04414HMPREF9540_04415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001325477.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9540_RS03150Primary locus identifier stored in the genes table.
Old locus tagHMPREF9540_04415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG771858.1Sequence record reported by the local genomic context database.
Genomic interval7 928-8 550 nt623 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 247-8 550 ntGCF_000164235::NZ_GG771858.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164235::NZ_GG771858.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG771858.1All displayed genes belong to this local TCS context.
Neighborhood span5 247-8 550 nt3 304 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 247 nt8 550 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9540_RS03155GCF_000164235#HMPREF9540_RS03155
HKClassic
5 247-7 931 nt · Forward (+)
HMPREF9540_RS03150GCF_000164235#HMPREF9540_RS03150
RROmpRCurrent focus
7 928-8 550 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002887535#B7440_RS14690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0847742
Simplified PFAM architecture for RROC_0847742
PFAM domain coverage: 185 / 242 aa (76.4%)
1 aa242 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_0847742
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_002887535#B7440_RS14690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 537 · GCF_000164235
AssemblyASM16423v1 · Scaffoldhaploid
Genome composition4 822 312 bp · 51,0% GCEscherichia coli MS 115-1
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key