1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:9.28e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9536_RS24025
Response regulator OmpR family
Escherichia coli MS 84-1 · GCF_000164215
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164215#HMPREF9536_RS24025Stable P2CS identifier used across views.
GenomeGCF_000164215Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-218 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:146:4.99e-30:218:74:77- Raw architecture: Response_reg:3:9.28e-33:112:111:111#Trans_reg_C:146:4.99e-30:218:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164215::NZ_GG771537.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45087-47116Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9536_00184RefSeq proteinWP_001340597.1
Context group ID
GCF_000164215::NZ_GG771537.1::G00039Context members
HMPREF9536_RS24025HMPREF9536_RS24020
Partner locus tags
HMPREF9536_RS24025HMPREF9536_RS24020
Partner old locus tags
HMPREF9536_00184HMPREF9536_00185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001340597.1Primary protein accession used for annex mappings.
UniProt accessionA0A0E0XYW9Primary UniProt accession resolved in the annex database.
UniProt IDA0A0E0XYW9_ECO1CDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9536_RS24025Primary locus identifier stored in the genes table.
Old locus tagHMPREF9536_00184Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG771537.1Sequence record reported by the local genomic context database.
Genomic interval45 087-45 758 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 087-47 116 ntGCF_000164215::NZ_GG771537.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164215::NZ_GG771537.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG771537.1All displayed genes belong to this local TCS context.
Neighborhood span45 087-47 116 nt2 030 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 087 nt47 116 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9536_RS24025GCF_000164215#HMPREF9536_RS24025
RROmpRCurrent focus
45 087-45 758 nt · Forward (+)
HMPREF9536_RS24020GCF_000164215#HMPREF9536_RS24020
HKClassic
45 758-47 116 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000026245#EC55989_RS11310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587191
Simplified PFAM architecture for RROC_1587191
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-218]
- Domain count: 2
- Matched identifier: RROC_1587191
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 146-218 ; Trans_reg_C 146-218
Cluster members and taxonomy
Representative gene: GCF_000026245#EC55989_RS11310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 533 · GCF_000164215
AssemblyASM16421v1 · Scaffoldhaploid
Genome composition5 292 439 bp · 50,5% GCEscherichia coli MS 84-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key