1 Response_reg#1
13-122 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:13:6.3e-30:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9536_RS22850
Response regulator OmpR family
Escherichia coli MS 84-1 · GCF_000164215
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164215#HMPREF9536_RS22850Stable P2CS identifier used across views.
GenomeGCF_000164215Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:156:1.26e-28:232:77:77- Raw architecture: Response_reg:13:6.3e-30:122:111:111#Trans_reg_C:156:1.26e-28:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164215::NZ_GG771556.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span136914-139036Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9536_00462RefSeq proteinWP_000137873.1
Context group ID
GCF_000164215::NZ_GG771556.1::G00038Context members
HMPREF9536_RS22850HMPREF9536_RS22845
Partner locus tags
HMPREF9536_RS22850HMPREF9536_RS22845
Partner old locus tags
HMPREF9536_00462HMPREF9536_00463
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000137873.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FQ64Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FQ64_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9536_RS22850Primary locus identifier stored in the genes table.
Old locus tagHMPREF9536_00462Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG771556.1Sequence record reported by the local genomic context database.
Genomic interval136 914-137 636 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span136 914-139 036 ntGCF_000164215::NZ_GG771556.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164215::NZ_GG771556.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG771556.1All displayed genes belong to this local TCS context.
Neighborhood span136 914-139 036 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 914 nt139 036 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9536_RS22850GCF_000164215#HMPREF9536_RS22850
RROmpRCurrent focus
136 914-137 636 nt · Reverse (-)
HMPREF9536_RS22845GCF_000164215#HMPREF9536_RS22845
HKClassic
137 633-139 036 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010385#ECSE_RS12215Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0881968
Simplified PFAM architecture for RROC_0881968
PFAM domain coverage: 186 / 240 aa (77.5%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0881968
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000010385#ECSE_RS12215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 533 · GCF_000164215
AssemblyASM16421v1 · Scaffoldhaploid
Genome composition5 292 439 bp · 50,5% GCEscherichia coli MS 84-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key