1 Response_reg#1
6-118 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:6:4.11e-36:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9536_RS19130
Response regulator, unclassified
Escherichia coli MS 84-1 · GCF_000164215
ClassRRTypeunclassifiedLength210 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164215#HMPREF9536_RS19130Stable P2CS identifier used across views.
GenomeGCF_000164215Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 210 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 GerE#2
149-204 aa · 56 aa · 26.7% of protein
Raw token
GerE:149:1.18e-24:204:56:57- Raw architecture: Response_reg:6:4.11e-36:118:113:111#GerE:149:1.18e-24:204:56:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164215::NZ_GG771591.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span18348-18980Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9536_01328RefSeq proteinWP_000805432.1
Context group ID
GCF_000164215::NZ_GG771591.1::G00029Context members
HMPREF9536_RS19130
Partner locus tags
HMPREF9536_RS19130
Partner old locus tags
HMPREF9536_01328
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000805432.1Primary protein accession used for annex mappings.
UniProt accessionJ7QN18Primary UniProt accession resolved in the annex database.
UniProt IDJ7QN18_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9536_RS19130Primary locus identifier stored in the genes table.
Old locus tagHMPREF9536_01328Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG771591.1Sequence record reported by the local genomic context database.
Genomic interval18 348-18 980 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 348-18 980 ntGCF_000164215::NZ_GG771591.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164215::NZ_GG771591.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG771591.1All displayed genes belong to this local TCS context.
Neighborhood span18 348-18 980 nt633 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 348 nt18 980 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9536_RS19130GCF_000164215#HMPREF9536_RS19130
RRunclassifiedCurrent focus
18 348-18 980 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900489225#EFA58_RS20725Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1765589
Simplified PFAM architecture for RROC_1765589
PFAM domain coverage: 169 / 220 aa (76.8%)
1 aa220 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-118] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1765589
- Positioned domains: Response_reg 6-118 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_900489225#EFA58_RS20725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 533 · GCF_000164215
AssemblyASM16421v1 · Scaffoldhaploid
Genome composition5 292 439 bp · 50,5% GCEscherichia coli MS 84-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key