1 Response_reg#1
10-121 aa · 112 aa · 33.2% of protein
Raw token
Response_reg:10:3.17e-36:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9536_RS15095
Response regulator, unclassified
Escherichia coli MS 84-1 · GCF_000164215
ClassRRTypeunclassifiedLength337 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164215#HMPREF9536_RS15095Stable P2CS identifier used across views.
GenomeGCF_000164215Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 337 aa (33.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:10:3.17e-36:121:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164215::NZ_GG771616.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span39571-40584Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9536_02260RefSeq proteinWP_000193447.1
Context group ID
GCF_000164215::NZ_GG771616.1::G00024Context members
HMPREF9536_RS15095
Partner locus tags
HMPREF9536_RS15095
Partner old locus tags
HMPREF9536_02260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000193447.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FL17Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FL17_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9536_RS15095Primary locus identifier stored in the genes table.
Old locus tagHMPREF9536_02260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG771616.1Sequence record reported by the local genomic context database.
Genomic interval39 571-40 584 nt1 014 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 571-40 584 ntGCF_000164215::NZ_GG771616.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164215::NZ_GG771616.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG771616.1All displayed genes belong to this local TCS context.
Neighborhood span39 571-40 584 nt1 014 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 571 nt40 584 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9536_RS15095GCF_000164215#HMPREF9536_RS15095
RRunclassifiedCurrent focus
39 571-40 584 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0505180
Simplified PFAM architecture for RROC_0505180
PFAM domain coverage: 111 / 337 aa (32.9%)
1 aa337 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[10-120]
- Domain count: 1
- Matched identifier: RROC_0505180
- Positioned domains: Response_reg 10-120 ; Response_reg 10-120
Cluster members and taxonomy
Representative gene: GCF_000005845#b1235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 533 · GCF_000164215
AssemblyASM16421v1 · Scaffoldhaploid
Genome composition5 292 439 bp · 50,5% GCEscherichia coli MS 84-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key