1 Response_reg#1
6-108 aa · 103 aa · 29.5% of protein
Raw token
Response_reg:6:7.87e-27:108:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9536_RS12560
Response regulator, CheB family
Escherichia coli MS 84-1 · GCF_000164215
ClassRRTypeCheBLength349 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164215#HMPREF9536_RS12560Stable P2CS identifier used across views.
GenomeGCF_000164215Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length349 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage282 / 349 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa349 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
159-337 aa · 179 aa · 51.3% of protein
Raw token
CheB_methylest:159:3.44e-91:337:180:177- Raw architecture: Response_reg:6:7.87e-27:108:105:111#CheB_methylest:159:3.44e-91:337:180:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164215::NZ_GG771630.1::G00018
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span276692-278145Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9536_02840RefSeq proteinWP_000036371.1
Context group ID
GCF_000164215::NZ_GG771630.1::G00018Context members
HMPREF9536_RS12565HMPREF9536_RS12560
Partner locus tags
HMPREF9536_RS12565HMPREF9536_RS12560
Partner old locus tags
HMPREF9536_02839HMPREF9536_02840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000036371.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4AXD3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4AXD3_SHIDYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9536_RS12560Primary locus identifier stored in the genes table.
Old locus tagHMPREF9536_02840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG771630.1Sequence record reported by the local genomic context database.
Genomic interval277 096-278 145 nt1 050 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span276 692-278 145 ntGCF_000164215::NZ_GG771630.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164215::NZ_GG771630.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG771630.1All displayed genes belong to this local TCS context.
Neighborhood span276 692-278 145 nt1 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
276 692 nt278 145 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9536_RS12565GCF_000164215#HMPREF9536_RS12565
RRCheY
276 692-277 081 nt · Reverse (-)
HMPREF9536_RS12560GCF_000164215#HMPREF9536_RS12560
RRCheBCurrent focus
277 096-278 145 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007445#C_RS10880Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0481949
Simplified PFAM architecture for RROC_0481949
PFAM domain coverage: 281 / 349 aa (80.5%)
1 aa349 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[6-108] | CheB_methylest[159-336]
- Domain count: 2
- Matched identifier: RROC_0481949
- Positioned domains: Response_reg 6-108 ; Response_reg 6-108 ; CheB_methylest 159-336 ; CheB_methylest 159-336
Cluster members and taxonomy
Representative gene: GCF_000007445#C_RS10880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 533 · GCF_000164215
AssemblyASM16421v1 · Scaffoldhaploid
Genome composition5 292 439 bp · 50,5% GCEscherichia coli MS 84-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key