1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:4.68e-34:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9536_RS00750
Response regulator OmpR family
Escherichia coli MS 84-1 · GCF_000164215
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164215#HMPREF9536_RS00750Stable P2CS identifier used across views.
GenomeGCF_000164215Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:146:7.04e-32:221:77:77- Raw architecture: Response_reg:4:4.68e-34:113:110:111#Trans_reg_C:146:7.04e-32:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164215::NZ_GG771700.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11114-13235Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9536_05648RefSeq proteinWP_000770953.1
Context group ID
GCF_000164215::NZ_GG771700.1::G00001Context members
HMPREF9536_RS00755HMPREF9536_RS00750
Partner locus tags
HMPREF9536_RS00755HMPREF9536_RS00750
Partner old locus tags
HMPREF9536_05647HMPREF9536_05648
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000770953.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FHH4Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FHH4_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9536_RS00750Primary locus identifier stored in the genes table.
Old locus tagHMPREF9536_05648Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG771700.1Sequence record reported by the local genomic context database.
Genomic interval12 552-13 235 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 114-13 235 ntGCF_000164215::NZ_GG771700.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164215::NZ_GG771700.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG771700.1All displayed genes belong to this local TCS context.
Neighborhood span11 114-13 235 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 114 nt13 235 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9536_RS00755GCF_000164215#HMPREF9536_RS00755
HKClassic
11 114-12 562 nt · Reverse (-)
HMPREF9536_RS00750GCF_000164215#HMPREF9536_RS00750
RROmpRCurrent focus
12 552-13 235 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1353987
Simplified PFAM architecture for RROC_1353987
PFAM domain coverage: 186 / 227 aa (81.9%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1353987
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 146-221 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_000005845#b0571
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 533 · GCF_000164215
AssemblyASM16421v1 · Scaffoldhaploid
Genome composition5 292 439 bp · 50,5% GCEscherichia coli MS 84-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key