1 Response_reg#1
22-108 aa · 87 aa · 44.8% of protein
Raw token
Response_reg:22:0.00000000000000305:108:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0220_RS11695
Response regulator NarL family
Clostridioides difficile NAP08 · GCF_000164175
ClassRRTypeNarLLength194 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164175#HMPREF0220_RS11695Stable P2CS identifier used across views.
GenomeGCF_000164175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length194 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 194 aa (74.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
128-184 aa · 57 aa · 29.4% of protein
Raw token
HTH_LUXR:128:9.34e-18:184:57:58- Raw architecture: Response_reg:22:0.00000000000000305:108:87:111#HTH_LUXR:128:9.34e-18:184:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164175::NZ_GG770711.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span219110-219694Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0220_2980RefSeq proteinWP_330360710.1
Context group ID
GCF_000164175::NZ_GG770711.1::G00031Context members
HMPREF0220_RS11695
Partner locus tags
HMPREF0220_RS11695
Partner old locus tags
HMPREF0220_2980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330360710.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0220_RS11695Primary locus identifier stored in the genes table.
Old locus tagHMPREF0220_2980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG770711.1Sequence record reported by the local genomic context database.
Genomic interval219 110-219 694 nt585 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 110-219 694 ntGCF_000164175::NZ_GG770711.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164175::NZ_GG770711.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG770711.1All displayed genes belong to this local TCS context.
Neighborhood span219 110-219 694 nt585 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 110 nt219 694 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0220_RS11695GCF_000164175#HMPREF0220_RS11695
RRNarLCurrent focus
219 110-219 694 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164655#HMPREF0219_RS14820Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081110
Simplified PFAM architecture for RROC_2081110
PFAM domain coverage: 169 / 206 aa (82.0%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-119] | GerE[142-196]
- Domain count: 2
- Matched identifier: RROC_2081110
- Positioned domains: Response_reg 6-119 ; Response_reg 6-119 ; GerE 142-196 ; GerE 142-196
Cluster members and taxonomy
Representative gene: GCF_000164655#HMPREF0219_RS14820
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 289 total members. Page 1 / 6.
GCF_000164655#HMPREF0219_RS14820 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 259 · GCF_000164175
AssemblyASM16417v1 · Scaffoldhaploid
Genome composition4 078 686 bp · 29,0% GCClostridioides difficile NAP08
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key