1 HAMP#1
166-239 aa · 74 aa · 15.6% of protein
Raw token
HAMP:166:0.00000000887:239:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0220_RS08985
Histidine kinase, Classic
Clostridioides difficile NAP08 · GCF_000164175
ClassHKTypeClassicLength474 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164175#HMPREF0220_RS08985Stable P2CS identifier used across views.
GenomeGCF_000164175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length474 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 474 aa (52.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa474 aa
Domain-by-domain annotation3 items
2 HisKA#2
250-315 aa · 66 aa · 13.9% of protein
Raw token
HisKA:250:0.00000000411:315:66:643 HATPase_c#3
365-471 aa · 107 aa · 22.6% of protein
Raw token
HATPase_c:365:2.99e-25:471:107:109- Raw architecture: HAMP:166:0.00000000887:239:74:69#HisKA:250:0.00000000411:315:66:64#HATPase_c:365:2.99e-25:471:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164175::NZ_GG770712.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span145185-147320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0220_0279RefSeq proteinWP_003417591.1
Context group ID
GCF_000164175::NZ_GG770712.1::G00015Context members
HMPREF0220_RS08990HMPREF0220_RS08985
Partner locus tags
HMPREF0220_RS08990HMPREF0220_RS08985
Partner old locus tags
HMPREF0220_0278HMPREF0220_0279
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003417591.1Primary protein accession used for annex mappings.
UniProt accessionD5Q047Primary UniProt accession resolved in the annex database.
UniProt IDD5Q047_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0220_RS08985Primary locus identifier stored in the genes table.
Old locus tagHMPREF0220_0279Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG770712.1Sequence record reported by the local genomic context database.
Genomic interval145 896-147 320 nt1 425 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span145 185-147 320 ntGCF_000164175::NZ_GG770712.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164175::NZ_GG770712.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG770712.1All displayed genes belong to this local TCS context.
Neighborhood span145 185-147 320 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 185 nt147 320 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0220_RS08990GCF_000164175#HMPREF0220_RS08990
RROmpR
145 185-145 877 nt · Forward (+)
HMPREF0220_RS08985GCF_000164175#HMPREF0220_RS08985
HKClassicCurrent focus
145 896-147 320 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0202395Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1674187
Simplified PFAM architecture for HKOC_1674187
PFAM domain coverage: 222 / 474 aa (46.8%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[189-238] | HisKA[251-315] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1674187
- Positioned domains: HAMP 189-238 ; HisKA 251-315 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0202395
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 94 total members. Page 1 / 2.
GCF_000155065#QAE_RS0202395 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 259 · GCF_000164175
AssemblyASM16417v1 · Scaffoldhaploid
Genome composition4 078 686 bp · 29,0% GCClostridioides difficile NAP08
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key