1 Response_reg#1
9-120 aa · 112 aa · 35.1% of protein
Raw token
Response_reg:9:1.21e-27:120:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0220_RS08610
Response regulator, PleD family
Clostridioides difficile NAP08 · GCF_000164175
ClassRRTypePleDLength319 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164175#HMPREF0220_RS08610Stable P2CS identifier used across views.
GenomeGCF_000164175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length319 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage267 / 319 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa319 aa
Domain-by-domain annotation2 items
2 GGDEF#2
153-307 aa · 155 aa · 48.6% of protein
Raw token
GGDEF:153:8.36e-46:307:158:160- Raw architecture: Response_reg:9:1.21e-27:120:112:111#GGDEF:153:8.36e-46:307:158:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164175::NZ_GG770712.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span232889-233848Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0220_0358RefSeq proteinWP_003417901.1
Context group ID
GCF_000164175::NZ_GG770712.1::G00020Context members
HMPREF0220_RS08610
Partner locus tags
HMPREF0220_RS08610
Partner old locus tags
HMPREF0220_0358
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003417901.1Primary protein accession used for annex mappings.
UniProt accessionD5Q0C6Primary UniProt accession resolved in the annex database.
UniProt IDD5Q0C6_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0220_RS08610Primary locus identifier stored in the genes table.
Old locus tagHMPREF0220_0358Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG770712.1Sequence record reported by the local genomic context database.
Genomic interval232 889-233 848 nt960 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span232 889-233 848 ntGCF_000164175::NZ_GG770712.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164175::NZ_GG770712.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG770712.1All displayed genes belong to this local TCS context.
Neighborhood span232 889-233 848 nt960 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
232 889 nt233 848 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0220_RS08610GCF_000164175#HMPREF0220_RS08610
RRPleDCurrent focus
232 889-233 848 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0202590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0533521
Simplified PFAM architecture for RROC_0533521
PFAM domain coverage: 266 / 319 aa (83.4%)
1 aa319 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[9-120] | GGDEF[153-306]
- Domain count: 2
- Matched identifier: RROC_0533521
- Positioned domains: Response_reg 9-120 ; Response_reg 9-120 ; GGDEF 153-306 ; GGDEF 153-306
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0202590
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 304 total members. Page 1 / 7.
GCF_000155065#QAE_RS0202590 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 259 · GCF_000164175
AssemblyASM16417v1 · Scaffoldhaploid
Genome composition4 078 686 bp · 29,0% GCClostridioides difficile NAP08
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key