1 HAMP#1
186-251 aa · 66 aa · 13.5% of protein
Raw token
HAMP:186:0.0000000000000067:251:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9377_RS08735
Histidine kinase, Classic
Enterococcus faecalis R712 · GCF_000163815
ClassHKTypeClassicLength489 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000163815#HMPREF9377_RS08735Stable P2CS identifier used across views.
GenomeGCF_000163815Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 489 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa489 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-328 aa · 67 aa · 13.7% of protein
Raw token
HisKA:262:0.00000000000000485:328:67:643 HATPase_c#3
373-482 aa · 110 aa · 22.5% of protein
Raw token
HATPase_c:373:1.5e-30:482:110:109- Raw architecture: HAMP:186:0.0000000000000067:251:66:69#HisKA:262:0.00000000000000485:328:67:64#HATPase_c:373:1.5e-30:482:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000163815::NZ_GG739846.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span329686-331874Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9377_01046RefSeq proteinWP_002357872.1
Context group ID
GCF_000163815::NZ_GG739846.1::G00012Context members
HMPREF9377_RS08735HMPREF9377_RS08740
Partner locus tags
HMPREF9377_RS08735HMPREF9377_RS08740
Partner old locus tags
HMPREF9377_01046HMPREF9377_01047
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002357872.1Primary protein accession used for annex mappings.
UniProt accessionQ835W1Primary UniProt accession resolved in the annex database.
UniProt IDQ835W1_ENTFADisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9377_RS08735Primary locus identifier stored in the genes table.
Old locus tagHMPREF9377_01046Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG739846.1Sequence record reported by the local genomic context database.
Genomic interval329 686-331 155 nt1 470 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span329 686-331 874 ntGCF_000163815::NZ_GG739846.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000163815::NZ_GG739846.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG739846.1All displayed genes belong to this local TCS context.
Neighborhood span329 686-331 874 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
329 686 nt331 874 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9377_RS08735GCF_000163815#HMPREF9377_RS08735
HKClassicCurrent focus
329 686-331 155 nt · Reverse (-)
HMPREF9377_RS08740GCF_000163815#HMPREF9377_RS08740
RROmpR
331 155-331 874 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS06080Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1541175
Simplified PFAM architecture for HKOC_1541175
PFAM domain coverage: 227 / 489 aa (46.4%)
1 aa489 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-251] | HisKA[263-327] | HATPase_c[374-483]
- Domain count: 3
- Matched identifier: HKOC_1541175
- Positioned domains: HAMP 200-251 ; HisKA 263-327 ; HATPase_c 374-483
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS06080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 699 186 · GCF_000163815
AssemblyASM16381v1 · Scaffoldhaploid
Genome composition3 039 544 bp · 37,5% GCEnterococcus faecalis R712
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key