1 HAMP#1
140-207 aa · 68 aa · 15.7% of protein
Raw token
HAMP:140:0.0000000348:207:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECFG_RS13190
Histidine kinase, Classic
Escherichia coli FVEC1302 · GCF_000163215
ClassHKTypeClassicLength433 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000163215#ECFG_RS13190Stable P2CS identifier used across views.
GenomeGCF_000163215Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 433 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation3 items
2 HisKA#2
211-269 aa · 59 aa · 13.6% of protein
Raw token
HisKA:211:0.000000000326:269:62:643 HATPase_c#3
316-423 aa · 108 aa · 24.9% of protein
Raw token
HATPase_c:316:1.58e-29:423:109:109- Raw architecture: HAMP:140:0.0000000348:207:72:69#HisKA:211:0.000000000326:269:62:64#HATPase_c:316:1.58e-29:423:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000163215::NZ_GG774912.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span480126-482150Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECFG_00460RefSeq proteinWP_000732505.1
Context group ID
GCF_000163215::NZ_GG774912.1::G00011Context members
ECFG_RS13195ECFG_RS13190
Partner locus tags
ECFG_RS13195ECFG_RS13190
Partner old locus tags
ECFG_00459ECFG_00460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000732505.1Primary protein accession used for annex mappings.
UniProt accessionD3GTJ5Primary UniProt accession resolved in the annex database.
UniProt IDD3GTJ5_ECO44Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECFG_RS13190Primary locus identifier stored in the genes table.
Old locus tagECFG_00460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG774912.1Sequence record reported by the local genomic context database.
Genomic interval480 849-482 150 nt1 302 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span480 126-482 150 ntGCF_000163215::NZ_GG774912.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000163215::NZ_GG774912.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG774912.1All displayed genes belong to this local TCS context.
Neighborhood span480 126-482 150 nt2 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
480 126 nt482 150 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECFG_RS13195GCF_000163215#ECFG_RS13195
RROmpR
480 126-480 845 nt · Forward (+)
ECFG_RS13190GCF_000163215#ECFG_RS13190
HKClassicCurrent focus
480 849-482 150 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000026325#ECUMN_RS10460Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2140122
Simplified PFAM architecture for HKOC_2140122
PFAM domain coverage: 209 / 433 aa (48.3%)
1 aa433 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-206] | HisKA[212-270] | HATPase_c[318-423]
- Domain count: 3
- Matched identifier: HKOC_2140122
- Positioned domains: HAMP 163-206 ; HisKA 212-270 ; HATPase_c 318-423
Cluster members and taxonomy
Representative gene: GCF_000026325#ECUMN_RS10460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 656 379 · GCF_000163215
AssemblyASM16321v1 · Scaffoldhaploid
Genome composition5 339 642 bp · 50,5% GCEscherichia coli FVEC1302
Signal transduction countsGenes 60 · HK 28 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key