1 Response_reg#1
4-112 aa · 109 aa · 55.6% of protein
Raw token
Response_reg:4:1.11e-31:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECFG_RS01855
Response regulator, unclassified
Escherichia coli FVEC1302 · GCF_000163215
ClassRRTypeunclassifiedLength196 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000163215#ECFG_RS01855Stable P2CS identifier used across views.
GenomeGCF_000163215Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length196 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 196 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa196 aa
Domain-by-domain annotation2 items
2 GerE#2
136-190 aa · 55 aa · 28.1% of protein
Raw token
GerE:136:4.11e-25:190:55:57- Raw architecture: Response_reg:4:1.11e-31:112:112:111#GerE:136:4.11e-25:190:55:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000163215::NZ_GG774916.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span459464-461556Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECFG_04214RefSeq proteinWP_000633675.1
Context group ID
GCF_000163215::NZ_GG774916.1::G00005Context members
ECFG_RS01860ECFG_RS01855
Partner locus tags
ECFG_RS01860ECFG_RS01855
Partner old locus tags
ECFG_04213ECFG_04214
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000633675.1Primary protein accession used for annex mappings.
UniProt accessionB7NEY5Primary UniProt accession resolved in the annex database.
UniProt IDB7NEY5_ECOLUDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECFG_RS01855Primary locus identifier stored in the genes table.
Old locus tagECFG_04214Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG774916.1Sequence record reported by the local genomic context database.
Genomic interval460 966-461 556 nt591 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span459 464-461 556 ntGCF_000163215::NZ_GG774916.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000163215::NZ_GG774916.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG774916.1All displayed genes belong to this local TCS context.
Neighborhood span459 464-461 556 nt2 093 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
459 464 nt461 556 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECFG_RS01860GCF_000163215#ECFG_RS01860
HKClassic
459 464-460 966 nt · Reverse (-)
ECFG_RS01855GCF_000163215#ECFG_RS01855
RRunclassifiedCurrent focus
460 966-461 556 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000026325#ECUMN_RS21810Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2154867
Simplified PFAM architecture for RROC_2154867
PFAM domain coverage: 165 / 196 aa (84.2%)
1 aa196 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-112] | GerE[136-191]
- Domain count: 2
- Matched identifier: RROC_2154867
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; GerE 136-191 ; GerE 136-191
Cluster members and taxonomy
Representative gene: GCF_000026325#ECUMN_RS21810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 656 379 · GCF_000163215
AssemblyASM16321v1 · Scaffoldhaploid
Genome composition5 339 642 bp · 50,5% GCEscherichia coli FVEC1302
Signal transduction countsGenes 60 · HK 28 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key