1 Response_reg#1
5-113 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:5:1.06e-31:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFYG_RS18425
Response regulator OmpR family
Enterococcus faecalis T8 · GCF_000161875
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161875#EFYG_RS18425Stable P2CS identifier used across views.
GenomeGCF_000161875Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 231 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:151:5.35e-32:227:77:77- Raw architecture: Response_reg:5:1.06e-31:113:110:111#Trans_reg_C:151:5.35e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161875::NZ_GG698887.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span197834-199459Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFYG_02362RefSeq proteinWP_002388724.1
Context group ID
GCF_000161875::NZ_GG698887.1::G00003Context members
EFYG_RS18425EFYG_RS18430
Partner locus tags
EFYG_RS18425EFYG_RS18430
Partner old locus tags
EFYG_02362EFYG_02363
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002388724.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFYG_RS18425Primary locus identifier stored in the genes table.
Old locus tagEFYG_02362Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG698887.1Sequence record reported by the local genomic context database.
Genomic interval197 834-198 529 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span197 834-199 459 ntGCF_000161875::NZ_GG698887.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161875::NZ_GG698887.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG698887.1All displayed genes belong to this local TCS context.
Neighborhood span197 834-199 459 nt1 626 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
197 834 nt199 459 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFYG_RS18425GCF_000161875#EFYG_RS18425
RROmpRCurrent focus
197 834-198 529 nt · Forward (+)
EFYG_RS18430GCF_000161875#EFYG_RS18430
HKClassic
198 533-199 459 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148445#HMPREF9496_RS14435Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158072
Simplified PFAM architecture for RROC_1158072
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_1158072
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-227 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_000148445#HMPREF9496_RS14435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 639 · GCF_000161875
AssemblyASM16187v1 · Scaffoldhaploid
Genome composition3 037 388 bp · 37,5% GCEnterococcus faecalis T8
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key