1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:1.55e-27:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFYG_RS14115
Response regulator OmpR family
Enterococcus faecalis T8 · GCF_000161875
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161875#EFYG_RS14115Stable P2CS identifier used across views.
GenomeGCF_000161875Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-222 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:148:2.53e-31:222:76:77- Raw architecture: Response_reg:4:1.55e-27:113:111:111#Trans_reg_C:148:2.53e-31:222:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161875::NZ_GG698884.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44896-46609Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFYG_00852RefSeq proteinWP_002355809.1
Context group ID
GCF_000161875::NZ_GG698884.1::G00004Context members
EFYG_RS14110EFYG_RS14115
Partner locus tags
EFYG_RS14110EFYG_RS14115
Partner old locus tags
EFYG_00851EFYG_00852
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002355809.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TNJ0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TNJ0_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFYG_RS14115Primary locus identifier stored in the genes table.
Old locus tagEFYG_00852Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG698884.1Sequence record reported by the local genomic context database.
Genomic interval45 935-46 609 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 896-46 609 ntGCF_000161875::NZ_GG698884.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161875::NZ_GG698884.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG698884.1All displayed genes belong to this local TCS context.
Neighborhood span44 896-46 609 nt1 714 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 896 nt46 609 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFYG_RS14110GCF_000161875#EFYG_RS14110
HKClassic
44 896-45 921 nt · Reverse (-)
EFYG_RS14115GCF_000161875#EFYG_RS14115
RROmpRCurrent focus
45 935-46 609 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS12550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529005
Simplified PFAM architecture for RROC_1529005
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1529005
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS12550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 639 · GCF_000161875
AssemblyASM16187v1 · Scaffoldhaploid
Genome composition3 037 388 bp · 37,5% GCEnterococcus faecalis T8
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key