1 HAMP#1
201-264 aa · 64 aa · 12.7% of protein
Raw token
HAMP:201:0.000000000576:264:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0012_RS25050
Histidine kinase, Classic
Bacillus thuringiensis serovar pulsiensis BGSC 4CC1 · GCF_000161695
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161695#BTHUR0012_RS25050Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 502 aa (48.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
277-344 aa · 68 aa · 13.5% of protein
Raw token
HisKA:277:9.54e-17:344:68:643 HATPase_c#3
391-500 aa · 110 aa · 21.9% of protein
Raw token
HATPase_c:391:2.05e-24:500:111:109- Raw architecture: HAMP:201:0.000000000576:264:64:69#HisKA:277:9.54e-17:344:68:64#HATPase_c:391:2.05e-24:500:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161695::NZ_CM000757.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4713895-4716091Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0012_49280RefSeq proteinWP_000718090.1
Context group ID
GCF_000161695::NZ_CM000757.1::G00055Context members
BTHUR0012_RS25045BTHUR0012_RS25050
Partner locus tags
BTHUR0012_RS25045BTHUR0012_RS25050
Partner old locus tags
bthur0012_49290bthur0012_49280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000718090.1Primary protein accession used for annex mappings.
UniProt accessionA0A243CNV4Primary UniProt accession resolved in the annex database.
UniProt IDA0A243CNV4_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0012_RS25050Primary locus identifier stored in the genes table.
Old locus tagbthur0012_49280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000757.1Sequence record reported by the local genomic context database.
Genomic interval4 714 583-4 716 091 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 713 895-4 716 091 ntGCF_000161695::NZ_CM000757.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161695::NZ_CM000757.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000757.1All displayed genes belong to this local TCS context.
Neighborhood span4 713 895-4 716 091 nt2 197 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 713 895 nt4 716 091 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTHUR0012_RS25045GCF_000161695#BTHUR0012_RS25045
RROmpR
4 713 895-4 714 599 nt · Forward (+)
BTHUR0012_RS25050GCF_000161695#BTHUR0012_RS25050
HKClassicCurrent focus
4 714 583-4 716 091 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161695#BTHUR0012_RS25050The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1463924
Simplified PFAM architecture for HKOC_1463924
PFAM domain coverage: 218 / 502 aa (43.4%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[223-264] | HisKA[277-343] | HATPase_c[391-499]
- Domain count: 3
- Matched identifier: HKOC_1463924
- Positioned domains: HAMP 223-264 ; HisKA 277-343 ; HATPase_c 391-499
Cluster members and taxonomy
Representative gene: GCF_000161695#BTHUR0012_RS25050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 028 · GCF_000161695
AssemblyASM16169v1 · Chromosomehaploid
Genome composition6 002 603 bp · 35,0% GCBacillus thuringiensis serovar pulsiensis BGSC 4CC1
Signal transduction countsGenes 114 · HK 59 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key