1 Response_reg#1
5-115 aa · 111 aa · 48.9% of protein
Raw token
Response_reg:5:2.27e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0012_RS10605
Response regulator OmpR family
Bacillus thuringiensis serovar pulsiensis BGSC 4CC1 · GCF_000161695
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161695#BTHUR0012_RS10605Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 227 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 32.2% of protein
Raw token
Trans_reg_C:153:1.62e-32:225:74:77- Raw architecture: Response_reg:5:2.27e-35:115:111:111#Trans_reg_C:153:1.62e-32:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161695::NZ_CM000757.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2013162-2015207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0012_20450RefSeq proteinWP_000504576.1
Context group ID
GCF_000161695::NZ_CM000757.1::G00028Context members
BTHUR0012_RS10605BTHUR0012_RS10610
Partner locus tags
BTHUR0012_RS10605BTHUR0012_RS10610
Partner old locus tags
bthur0012_20450bthur0012_20460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000504576.1Primary protein accession used for annex mappings.
UniProt accessionA0A243D0K0Primary UniProt accession resolved in the annex database.
UniProt IDA0A243D0K0_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0012_RS10605Primary locus identifier stored in the genes table.
Old locus tagbthur0012_20450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000757.1Sequence record reported by the local genomic context database.
Genomic interval2 013 162-2 013 845 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 013 162-2 015 207 ntGCF_000161695::NZ_CM000757.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161695::NZ_CM000757.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000757.1All displayed genes belong to this local TCS context.
Neighborhood span2 013 162-2 015 207 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 013 162 nt2 015 207 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTHUR0012_RS10605GCF_000161695#BTHUR0012_RS10605
RROmpRCurrent focus
2 013 162-2 013 845 nt · Forward (+)
BTHUR0012_RS10610GCF_000161695#BTHUR0012_RS10610
HKClassic
2 013 849-2 015 207 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161695#BTHUR0012_RS10605The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354603
Simplified PFAM architecture for RROC_1354603
PFAM domain coverage: 184 / 227 aa (81.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1354603
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000161695#BTHUR0012_RS10605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 028 · GCF_000161695
AssemblyASM16169v1 · Chromosomehaploid
Genome composition6 002 603 bp · 35,0% GCBacillus thuringiensis serovar pulsiensis BGSC 4CC1
Signal transduction countsGenes 114 · HK 59 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key