1 Response_reg#1
3-115 aa · 113 aa · 52.1% of protein
Raw token
Response_reg:3:5.43e-30:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0011_RS02525
Response regulator NarL family
Bacillus thuringiensis serovar huazhongensis BGSC 4BD1 · GCF_000161675
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000161675#BTHUR0011_RS02525Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 217 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-213 aa · 55 aa · 25.3% of protein
Raw token
HTH_LUXR:159:1.19e-21:213:55:58- Raw architecture: Response_reg:3:5.43e-30:115:113:111#HTH_LUXR:159:1.19e-21:213:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000161675::NZ_CM000756.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span458219-458872Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0011_4440RefSeq proteinWP_000383621.1
Context group ID
GCF_000161675::NZ_CM000756.1::G00004Context members
BTHUR0011_RS02525
Partner locus tags
BTHUR0011_RS02525
Partner old locus tags
bthur0011_4440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000383621.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0011_RS02525Primary locus identifier stored in the genes table.
Old locus tagbthur0011_4440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000756.1Sequence record reported by the local genomic context database.
Genomic interval458 219-458 872 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span458 219-458 872 ntGCF_000161675::NZ_CM000756.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161675::NZ_CM000756.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000756.1All displayed genes belong to this local TCS context.
Neighborhood span458 219-458 872 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
458 219 nt458 872 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BTHUR0011_RS02525GCF_000161675#BTHUR0011_RS02525
RRNarLCurrent focus
458 219-458 872 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161675#BTHUR0011_RS02525The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847737
Simplified PFAM architecture for RROC_1847737
PFAM domain coverage: 167 / 217 aa (77.0%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-114] | GerE[158-212]
- Domain count: 2
- Matched identifier: RROC_1847737
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; GerE 158-212 ; GerE 158-212
Cluster members and taxonomy
Representative gene: GCF_000161675#BTHUR0011_RS02525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 030 · GCF_000161675
AssemblyASM16167v1 · Chromosomehaploid
Genome composition6 231 196 bp · 34,5% GCBacillus thuringiensis serovar huazhongensis BGSC 4BD1
Signal transduction countsGenes 118 · HK 63 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key