1 HAMP#1
158-229 aa · 72 aa · 15.9% of protein
Raw token
HAMP:158:0.00000000109:229:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0010_RS10520
Histidine kinase, Classic
Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1 · GCF_000161655
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161655#BTHUR0010_RS10520Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 452 aa (54.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-300 aa · 68 aa · 15.0% of protein
Raw token
HisKA:233:0.0000000000000129:300:68:643 HATPase_c#3
343-449 aa · 107 aa · 23.7% of protein
Raw token
HATPase_c:343:4.41e-31:449:108:109- Raw architecture: HAMP:158:0.00000000109:229:72:69#HisKA:233:0.0000000000000129:300:68:64#HATPase_c:343:4.41e-31:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161655::NZ_CM000755.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1962114-1964159Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0010_19960RefSeq proteinWP_000694901.1
Context group ID
GCF_000161655::NZ_CM000755.1::G00025Context members
BTHUR0010_RS10515BTHUR0010_RS10520
Partner locus tags
BTHUR0010_RS10515BTHUR0010_RS10520
Partner old locus tags
bthur0010_19950bthur0010_19960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694901.1Primary protein accession used for annex mappings.
UniProt accessionA0A0B5X203Primary UniProt accession resolved in the annex database.
UniProt IDA0A0B5X203_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0010_RS10520Primary locus identifier stored in the genes table.
Old locus tagbthur0010_19960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000755.1Sequence record reported by the local genomic context database.
Genomic interval1 962 801-1 964 159 nt1 359 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 962 114-1 964 159 ntGCF_000161655::NZ_CM000755.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161655::NZ_CM000755.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000755.1All displayed genes belong to this local TCS context.
Neighborhood span1 962 114-1 964 159 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 962 114 nt1 964 159 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTHUR0010_RS10515GCF_000161655#BTHUR0010_RS10515
RROmpR
1 962 114-1 962 797 nt · Forward (+)
BTHUR0010_RS10520GCF_000161655#BTHUR0010_RS10520
HKClassicCurrent focus
1 962 801-1 964 159 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161655#BTHUR0010_RS10520The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1937047
Simplified PFAM architecture for HKOC_1937047
PFAM domain coverage: 325 / 452 aa (71.9%)
1 aa452 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[51-151] | HAMP[176-228] | HisKA[234-297] | HATPase_c[343-449]
- Domain count: 4
- Matched identifier: HKOC_1937047
- Positioned domains: ArlS_N 51-151 ; HAMP 176-228 ; HisKA 234-297 ; HATPase_c 343-449
Cluster members and taxonomy
Representative gene: GCF_000161655#BTHUR0010_RS10520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 029 · GCF_000161655
AssemblyASM16165v1 · Chromosomehaploid
Genome composition6 031 475 bp · 35,0% GCBacillus thuringiensis serovar pondicheriensis BGSC 4BA1
Signal transduction countsGenes 103 · HK 53 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key