1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:3.3e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0010_RS03285
Response regulator OmpR family
Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1 · GCF_000161655
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161655#BTHUR0010_RS03285Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 223 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 35.0% of protein
Raw token
Trans_reg_C:143:6.06e-27:220:78:77- Raw architecture: Response_reg:4:3.3e-36:113:111:111#Trans_reg_C:143:6.06e-27:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161655::NZ_CM000755.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span622123-624323Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0010_5000RefSeq proteinWP_000238949.1
Context group ID
GCF_000161655::NZ_CM000755.1::G00005Context members
BTHUR0010_RS03285BTHUR0010_RS03290
Partner locus tags
BTHUR0010_RS03285BTHUR0010_RS03290
Partner old locus tags
bthur0010_5000bthur0010_4990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000238949.1Primary protein accession used for annex mappings.
UniProt accessionQ6HNM7Primary UniProt accession resolved in the annex database.
UniProt IDQ6HNM7_BACHKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0010_RS03285Primary locus identifier stored in the genes table.
Old locus tagbthur0010_5000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000755.1Sequence record reported by the local genomic context database.
Genomic interval622 123-622 794 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span622 123-624 323 ntGCF_000161655::NZ_CM000755.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161655::NZ_CM000755.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000755.1All displayed genes belong to this local TCS context.
Neighborhood span622 123-624 323 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
622 123 nt624 323 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTHUR0010_RS03285GCF_000161655#BTHUR0010_RS03285
RROmpRCurrent focus
622 123-622 794 nt · Forward (+)
BTHUR0010_RS03290GCF_000161655#BTHUR0010_RS03290
HKClassic
622 860-624 323 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008505#BT9727_RS03000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586837
Simplified PFAM architecture for RROC_1586837
PFAM domain coverage: 186 / 223 aa (83.4%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1586837
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000008505#BT9727_RS03000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 029 · GCF_000161655
AssemblyASM16165v1 · Chromosomehaploid
Genome composition6 031 475 bp · 35,0% GCBacillus thuringiensis serovar pondicheriensis BGSC 4BA1
Signal transduction countsGenes 103 · HK 53 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key