1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:3.28e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0007_RS23230
Response regulator OmpR family
Bacillus thuringiensis serovar monterrey BGSC 4AJ1 · GCF_000161595
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161595#BTHUR0007_RS23230Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:2.98e-36:227:77:77- Raw architecture: Response_reg:5:3.28e-32:114:111:111#Trans_reg_C:151:2.98e-36:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161595::NZ_CM000752.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4437139-4438768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0007_43860RefSeq proteinWP_000018062.1
Context group ID
GCF_000161595::NZ_CM000752.1::G00046Context members
BTHUR0007_RS23230BTHUR0007_RS23235
Partner locus tags
BTHUR0007_RS23230BTHUR0007_RS23235
Partner old locus tags
bthur0007_43860bthur0007_43850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000018062.1Primary protein accession used for annex mappings.
UniProt accessionQ6HCY9Primary UniProt accession resolved in the annex database.
UniProt IDQ6HCY9_BACHKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0007_RS23230Primary locus identifier stored in the genes table.
Old locus tagbthur0007_43860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000752.1Sequence record reported by the local genomic context database.
Genomic interval4 437 139-4 437 831 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 437 139-4 438 768 ntGCF_000161595::NZ_CM000752.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161595::NZ_CM000752.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000752.1All displayed genes belong to this local TCS context.
Neighborhood span4 437 139-4 438 768 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 437 139 nt4 438 768 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTHUR0007_RS23230GCF_000161595#BTHUR0007_RS23230
RROmpRCurrent focus
4 437 139-4 437 831 nt · Forward (+)
BTHUR0007_RS23235GCF_000161595#BTHUR0007_RS23235
HKClassic
4 437 833-4 438 768 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008505#BT9727_RS22340Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199652
Simplified PFAM architecture for RROC_1199652
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1199652
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000008505#BT9727_RS22340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 022 · GCF_000161595
AssemblyASM16159v1 · Chromosomehaploid
Genome composition6 489 024 bp · 34,5% GCBacillus thuringiensis serovar monterrey BGSC 4AJ1
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key