1 Response_reg#1
1-58 aa · 58 aa · 33.1% of protein
Raw token
Response_reg:1:7.57e-18:58:59:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0005_RS09025
Response regulator OmpR family
Bacillus thuringiensis serovar pakistani str. T13001 · GCF_000161555
ClassRRTypeOmpRLength175 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161555#BTHUR0005_RS09025Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length175 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage135 / 175 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa175 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
97-173 aa · 77 aa · 44.0% of protein
Raw token
Trans_reg_C:97:5.89e-33:173:77:77- Raw architecture: Response_reg:1:7.57e-18:58:59:111#Trans_reg_C:97:5.89e-33:173:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161555::NZ_CM000750.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1681497-1683092Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0005_17000RefSeq proteinWP_000298672.1
Context group ID
GCF_000161555::NZ_CM000750.1::G00027Context members
BTHUR0005_RS09020BTHUR0005_RS09025
Partner locus tags
BTHUR0005_RS09020BTHUR0005_RS09025
Partner old locus tags
bthur0005_17010bthur0005_17000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000298672.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0005_RS09025Primary locus identifier stored in the genes table.
Old locus tagbthur0005_17000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000750.1Sequence record reported by the local genomic context database.
Genomic interval1 682 563-1 683 092 nt530 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 681 497-1 683 092 ntGCF_000161555::NZ_CM000750.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161555::NZ_CM000750.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000750.1All displayed genes belong to this local TCS context.
Neighborhood span1 681 497-1 683 092 nt1 596 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 681 497 nt1 683 092 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTHUR0005_RS09020GCF_000161555#BTHUR0005_RS09020
HKClassic
1 681 497-1 682 597 nt · Reverse (-)
BTHUR0005_RS09025GCF_000161555#BTHUR0005_RS09025
RROmpRCurrent focus
1 682 563-1 683 092 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161355#BCERE0027_RS08850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119802
Simplified PFAM architecture for RROC_1119802
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1119802
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000161355#BCERE0027_RS08850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 027 · GCF_000161555
AssemblyASM16155v1 · Chromosomehaploid
Genome composition6 037 513 bp · 35,0% GCBacillus thuringiensis serovar pakistani str. T13001
Signal transduction countsGenes 109 · HK 58 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key