1 Response_reg#1
5-116 aa · 112 aa · 52.8% of protein
Raw token
Response_reg:5:3.66e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0005_RS08130
Response regulator NarL family
Bacillus thuringiensis serovar pakistani str. T13001 · GCF_000161555
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000161555#BTHUR0005_RS08130Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 212 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-205 aa · 54 aa · 25.5% of protein
Raw token
HTH_LUXR:152:1.6e-18:205:54:58- Raw architecture: Response_reg:5:3.66e-28:116:113:111#HTH_LUXR:152:1.6e-18:205:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000161555::NZ_CM000750.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1506983-1507621Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0005_16330RefSeq proteinWP_000694096.1
Context group ID
GCF_000161555::NZ_CM000750.1::G00024Context members
BTHUR0005_RS08130
Partner locus tags
BTHUR0005_RS08130
Partner old locus tags
bthur0005_16330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694096.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X0F3H9Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X0F3H9_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0005_RS08130Primary locus identifier stored in the genes table.
Old locus tagbthur0005_16330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000750.1Sequence record reported by the local genomic context database.
Genomic interval1 506 983-1 507 621 nt639 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 506 983-1 507 621 ntGCF_000161555::NZ_CM000750.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161555::NZ_CM000750.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000750.1All displayed genes belong to this local TCS context.
Neighborhood span1 506 983-1 507 621 nt639 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 506 983 nt1 507 621 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BTHUR0005_RS08130GCF_000161555#BTHUR0005_RS08130
RRNarLCurrent focus
1 506 983-1 507 621 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161555#BTHUR0005_RS08130The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1986131
Simplified PFAM architecture for RROC_1986131
PFAM domain coverage: 167 / 212 aa (78.8%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[151-205]
- Domain count: 2
- Matched identifier: RROC_1986131
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 151-205 ; GerE 151-205
Cluster members and taxonomy
Representative gene: GCF_000161555#BTHUR0005_RS08130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 027 · GCF_000161555
AssemblyASM16155v1 · Chromosomehaploid
Genome composition6 037 513 bp · 35,0% GCBacillus thuringiensis serovar pakistani str. T13001
Signal transduction countsGenes 109 · HK 58 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key