1 HisKA#1
205-265 aa · 61 aa · 14.6% of protein
Raw token
HisKA:205:2.12e-16:265:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0002_RS12180
Histidine kinase, Classic
Bacillus thuringiensis Bt407 · GCF_000161495
ClassHKTypeClassicLength419 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000161495#BTHUR0002_RS12180Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length419 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 419 aa (39.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa419 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-412 aa · 104 aa · 24.8% of protein
Raw token
HATPase_c:309:1.3e-22:412:107:109- Raw architecture: HisKA:205:2.12e-16:265:61:64#HATPase_c:309:1.3e-22:412:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000161495::NZ_CM000747.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2396988-2398247Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0002_24150RefSeq proteinWP_000348328.1
Context group ID
GCF_000161495::NZ_CM000747.1::G00031Context members
BTHUR0002_RS12180
Partner locus tags
BTHUR0002_RS12180
Partner old locus tags
bthur0002_24150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000348328.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4KPG6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4KPG6_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0002_RS12180Primary locus identifier stored in the genes table.
Old locus tagbthur0002_24150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000747.1Sequence record reported by the local genomic context database.
Genomic interval2 396 988-2 398 247 nt1 260 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 396 988-2 398 247 ntGCF_000161495::NZ_CM000747.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161495::NZ_CM000747.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000747.1All displayed genes belong to this local TCS context.
Neighborhood span2 396 988-2 398 247 nt1 260 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 396 988 nt2 398 247 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BTHUR0002_RS12180GCF_000161495#BTHUR0002_RS12180
HKClassicCurrent focus
2 396 988-2 398 247 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161495#BTHUR0002_RS12180The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2276121
Simplified PFAM architecture for HKOC_2276121
PFAM domain coverage: 323 / 419 aa (77.1%)
1 aa419 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[22-178] | HisKA[205-266] | HATPase_c[310-413]
- Domain count: 3
- Matched identifier: HKOC_2276121
- Positioned domains: 5TM-5TMR_LYT 22-178 ; HisKA 205-266 ; HATPase_c 310-413
Cluster members and taxonomy
Representative gene: GCF_000161495#BTHUR0002_RS12180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 021 · GCF_000161495
AssemblyASM16149v1 · Chromosomehaploid
Genome composition6 026 843 bp · 35,0% GCBacillus thuringiensis Bt407
Signal transduction countsGenes 106 · HK 57 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key