1 Response_reg#1
4-116 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:4:1e-18:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0027_RS04490
Response regulator, unclassified
Bacillus cereus AH676 · GCF_000161355
ClassRRTypeunclassifiedLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000161355#BCERE0027_RS04490Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 225 aa (50.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1e-18:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000161355::NZ_CM000738.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span871336-872013Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0027_8350RefSeq proteinWP_000921514.1
Context group ID
GCF_000161355::NZ_CM000738.1::G00010Context members
BCERE0027_RS04490
Partner locus tags
BCERE0027_RS04490
Partner old locus tags
bcere0027_8350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000921514.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7RFZ2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7RFZ2_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0027_RS04490Primary locus identifier stored in the genes table.
Old locus tagbcere0027_8350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000738.1Sequence record reported by the local genomic context database.
Genomic interval871 336-872 013 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span871 336-872 013 ntGCF_000161355::NZ_CM000738.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161355::NZ_CM000738.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000738.1All displayed genes belong to this local TCS context.
Neighborhood span871 336-872 013 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
871 336 nt872 013 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCERE0027_RS04490GCF_000161355#BCERE0027_RS04490
RRunclassifiedCurrent focus
871 336-872 013 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161355#BCERE0027_RS04490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1463386
Simplified PFAM architecture for RROC_1463386
PFAM domain coverage: 177 / 225 aa (78.7%)
1 aa225 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[4-115] | HTH_64[158-222]
- Domain count: 2
- Matched identifier: RROC_1463386
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_64 158-222 ; HTH_64 158-222
Cluster members and taxonomy
Representative gene: GCF_000161355#BCERE0027_RS04490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 991 · GCF_000161355
AssemblyASM16135v1 · Chromosomehaploid
Genome composition5 594 747 bp · 35,0% GCBacillus cereus AH676
Signal transduction countsGenes 106 · HK 58 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key