1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:1.69e-34:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0018_RS02630
Response regulator OmpR family
Bacillus cereus Rock1-15 · GCF_000161175
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161175#BCERE0018_RS02630Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:145:1.06e-27:220:77:77- Raw architecture: Response_reg:4:1.69e-34:112:110:111#Trans_reg_C:145:1.06e-27:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161175::NZ_CM000729.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span485374-487292Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0018_4670RefSeq proteinWP_001238621.1
Context group ID
GCF_000161175::NZ_CM000729.1::G00005Context members
BCERE0018_RS02630BCERE0018_RS02635
Partner locus tags
BCERE0018_RS02630BCERE0018_RS02635
Partner old locus tags
bcere0018_4670bcere0018_4680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001238621.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6IZN0Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6IZN0_BACUDDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0018_RS02630Primary locus identifier stored in the genes table.
Old locus tagbcere0018_4670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000729.1Sequence record reported by the local genomic context database.
Genomic interval485 374-486 045 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span485 374-487 292 ntGCF_000161175::NZ_CM000729.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161175::NZ_CM000729.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000729.1All displayed genes belong to this local TCS context.
Neighborhood span485 374-487 292 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
485 374 nt487 292 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERE0018_RS02630GCF_000161175#BCERE0018_RS02630
RROmpRCurrent focus
485 374-486 045 nt · Forward (+)
BCERE0018_RS02635GCF_000161175#BCERE0018_RS02635
HKClassic
486 042-487 292 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS02870Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586818
Simplified PFAM architecture for RROC_1586818
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1586818
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS02870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 982 · GCF_000161175
AssemblyASM16117v1 · Chromosomehaploid
Genome composition5 766 278 bp · 35,0% GCBacillus cereus Rock1-15
Signal transduction countsGenes 105 · HK 57 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key