1 CheW#1
17-149 aa · 133 aa · 44.0% of protein
Raw token
CheW:17:7.42e-40:149:134:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0006_RS07720
Response regulator CheV family
Bacillus wiedmannii · GCF_000160955
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000160955#BCERE0006_RS07720Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 302 aa (84.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
176-298 aa · 123 aa · 40.7% of protein
Raw token
Response_reg:176:6.9e-17:298:124:111- Raw architecture: CheW:17:7.42e-40:149:134:138#Response_reg:176:6.9e-17:298:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000160955::NZ_CM000718.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1529648-1530556Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0006_15140RefSeq proteinWP_000075950.1
Context group ID
GCF_000160955::NZ_CM000718.1::G00024Context members
BCERE0006_RS07720
Partner locus tags
BCERE0006_RS07720
Partner old locus tags
bcere0006_15140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000075950.1Primary protein accession used for annex mappings.
UniProt accessionA0A1J9U4V6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1J9U4V6_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0006_RS07720Primary locus identifier stored in the genes table.
Old locus tagbcere0006_15140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000718.1Sequence record reported by the local genomic context database.
Genomic interval1 529 648-1 530 556 nt909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 529 648-1 530 556 ntGCF_000160955::NZ_CM000718.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160955::NZ_CM000718.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000718.1All displayed genes belong to this local TCS context.
Neighborhood span1 529 648-1 530 556 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 529 648 nt1 530 556 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCERE0006_RS07720GCF_000160955#BCERE0006_RS07720
RRCheVCurrent focus
1 529 648-1 530 556 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160955#BCERE0006_RS07720The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0568537
Simplified PFAM architecture for RROC_0568537
PFAM domain coverage: 252 / 302 aa (83.4%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[18-149] | Response_reg[176-295]
- Domain count: 2
- Matched identifier: RROC_0568537
- Positioned domains: CheW 18-149 ; CheW 18-149 ; Response_reg 176-295 ; Response_reg 176-295
Cluster members and taxonomy
Representative gene: GCF_000160955#BCERE0006_RS07720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_000160955
AssemblyASM16095v1 · Chromosomehaploid
Genome composition5 547 057 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 113 · HK 59 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key