1 HisKA_3#1
566-629 aa · 64 aa · 8.4% of protein
Raw token
HisKA_3:566:0.00000000514:629:66:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0006_RS05155
Histidine kinase, Classic
Bacillus wiedmannii · GCF_000160955
ClassHKTypeClassicLength761 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160955#BCERE0006_RS05155Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length761 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 761 aa (20.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa761 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
671-760 aa · 90 aa · 11.8% of protein
Raw token
HATPase_c:671:0.00000000000279:760:103:109- Raw architecture: HisKA_3:566:0.00000000514:629:66:68#HATPase_c:671:0.00000000000279:760:103:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160955::NZ_CM000718.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1043983-1046972Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0006_9960RefSeq proteinWP_000789326.1
Context group ID
GCF_000160955::NZ_CM000718.1::G00015Context members
BCERE0006_RS05150BCERE0006_RS05155
Partner locus tags
BCERE0006_RS05150BCERE0006_RS05155
Partner old locus tags
bcere0006_9970bcere0006_9960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000789326.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0006_RS05155Primary locus identifier stored in the genes table.
Old locus tagbcere0006_9960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000718.1Sequence record reported by the local genomic context database.
Genomic interval1 044 687-1 046 972 nt2 286 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 043 983-1 046 972 ntGCF_000160955::NZ_CM000718.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160955::NZ_CM000718.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000718.1All displayed genes belong to this local TCS context.
Neighborhood span1 043 983-1 046 972 nt2 990 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 043 983 nt1 046 972 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERE0006_RS05150GCF_000160955#BCERE0006_RS05150
RRNarL
1 043 983-1 044 642 nt · Reverse (-)
BCERE0006_RS05155GCF_000160955#BCERE0006_RS05155
HKClassicCurrent focus
1 044 687-1 046 972 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160955#BCERE0006_RS05155The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0640688
Simplified PFAM architecture for HKOC_0640688
PFAM domain coverage: 153 / 761 aa (20.1%)
1 aa761 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[566-629] | HATPase_c[671-759]
- Domain count: 2
- Matched identifier: HKOC_0640688
- Positioned domains: HisKA_3 566-629 ; HATPase_c 671-759
Cluster members and taxonomy
Representative gene: GCF_000160955#BCERE0006_RS05155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_000160955
AssemblyASM16095v1 · Chromosomehaploid
Genome composition5 547 057 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 113 · HK 59 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key