1 Response_reg#1
4-115 aa · 112 aa · 51.6% of protein
Raw token
Response_reg:4:7.26e-31:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0006_RS01155
Response regulator NarL family
Bacillus wiedmannii · GCF_000160955
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160955#BCERE0006_RS01155Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 217 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-208 aa · 58 aa · 26.7% of protein
Raw token
HTH_LUXR:151:3.09e-22:208:58:58- Raw architecture: Response_reg:4:7.26e-31:115:112:111#HTH_LUXR:151:3.09e-22:208:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160955::NZ_CM000718.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span214094-215937Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0006_1930RefSeq proteinWP_000619339.1
Context group ID
GCF_000160955::NZ_CM000718.1::G00001Context members
BCERE0006_RS01155BCERE0006_RS01160
Partner locus tags
BCERE0006_RS01155BCERE0006_RS01160
Partner old locus tags
bcere0006_1930bcere0006_1920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000619339.1Primary protein accession used for annex mappings.
UniProt accessionA0A0G8BUE4Primary UniProt accession resolved in the annex database.
UniProt IDA0A0G8BUE4_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0006_RS01155Primary locus identifier stored in the genes table.
Old locus tagbcere0006_1930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000718.1Sequence record reported by the local genomic context database.
Genomic interval214 094-214 747 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span214 094-215 937 ntGCF_000160955::NZ_CM000718.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160955::NZ_CM000718.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000718.1All displayed genes belong to this local TCS context.
Neighborhood span214 094-215 937 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
214 094 nt215 937 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERE0006_RS01155GCF_000160955#BCERE0006_RS01155
RRNarLCurrent focus
214 094-214 747 nt · Reverse (-)
BCERE0006_RS01160GCF_000160955#BCERE0006_RS01160
HKClassic
214 744-215 937 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160955#BCERE0006_RS01155The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847735
Simplified PFAM architecture for RROC_1847735
PFAM domain coverage: 168 / 217 aa (77.4%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[153-208]
- Domain count: 2
- Matched identifier: RROC_1847735
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 153-208 ; GerE 153-208
Cluster members and taxonomy
Representative gene: GCF_000160955#BCERE0006_RS01155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_000160955
AssemblyASM16095v1 · Chromosomehaploid
Genome composition5 547 057 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 113 · HK 59 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key