1 HAMP#1
63-130 aa · 68 aa · 18.5% of protein
Raw token
HAMP:63:0.00000025:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0005_RS22960
Histidine kinase, Classic
Bacillus cereus 172560W · GCF_000160935
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160935#BCERE0005_RS22960Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 368 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.5% of protein
Raw token
HisKA:141:0.000000000000577:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:253:1.43e-26:364:113:109- Raw architecture: HAMP:63:0.00000025:130:68:69#HisKA:141:0.000000000000577:208:68:64#HATPase_c:253:1.43e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160935::NZ_CM000717.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4449692-4451489Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0005_45130RefSeq proteinWP_000002610.1
Context group ID
GCF_000160935::NZ_CM000717.1::G00052Context members
BCERE0005_RS22960BCERE0005_RS22965
Partner locus tags
BCERE0005_RS22960BCERE0005_RS22965
Partner old locus tags
bcere0005_45130bcere0005_45140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000002610.1Primary protein accession used for annex mappings.
UniProt accessionW8YAG2Primary UniProt accession resolved in the annex database.
UniProt IDW8YAG2_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0005_RS22960Primary locus identifier stored in the genes table.
Old locus tagbcere0005_45130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000717.1Sequence record reported by the local genomic context database.
Genomic interval4 449 692-4 450 798 nt1 107 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 449 692-4 451 489 ntGCF_000160935::NZ_CM000717.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160935::NZ_CM000717.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000717.1All displayed genes belong to this local TCS context.
Neighborhood span4 449 692-4 451 489 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 449 692 nt4 451 489 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERE0005_RS22960GCF_000160935#BCERE0005_RS22960
HKClassicCurrent focus
4 449 692-4 450 798 nt · Reverse (-)
BCERE0005_RS22965GCF_000160935#BCERE0005_RS22965
RROmpR
4 450 791-4 451 489 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160935#BCERE0005_RS22960The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2698062
Simplified PFAM architecture for HKOC_2698062
PFAM domain coverage: 219 / 368 aa (59.5%)
1 aa368 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[88-129] | HisKA[142-207] | HATPase_c[253-363]
- Domain count: 3
- Matched identifier: HKOC_2698062
- Positioned domains: HAMP 88-129 ; HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_000160935#BCERE0005_RS22960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 967 · GCF_000160935
AssemblyASM16093v1 · Chromosomehaploid
Genome composition5 699 545 bp · 35,0% GCBacillus cereus 172560W
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key