1 Response_reg#1
5-116 aa · 112 aa · 52.8% of protein
Raw token
Response_reg:5:1.26e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0002_RS08040
Response regulator NarL family
Bacillus cereus ATCC 10876 · GCF_000160895
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160895#BCERE0002_RS08040Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 212 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-205 aa · 54 aa · 25.5% of protein
Raw token
HTH_LUXR:152:1.89e-18:205:54:58- Raw architecture: Response_reg:5:1.26e-28:116:113:111#HTH_LUXR:152:1.89e-18:205:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160895::NZ_CM000715.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1514111-1515854Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0002_16110RefSeq proteinWP_001999532.1
Context group ID
GCF_000160895::NZ_CM000715.1::G00022Context members
BCERE0002_RS08035BCERE0002_RS08040
Partner locus tags
BCERE0002_RS08035BCERE0002_RS08040
Partner old locus tags
bcere0002_16120bcere0002_16110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001999532.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0002_RS08040Primary locus identifier stored in the genes table.
Old locus tagbcere0002_16110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000715.1Sequence record reported by the local genomic context database.
Genomic interval1 515 216-1 515 854 nt639 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 514 111-1 515 854 ntGCF_000160895::NZ_CM000715.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160895::NZ_CM000715.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000715.1All displayed genes belong to this local TCS context.
Neighborhood span1 514 111-1 515 854 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 514 111 nt1 515 854 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERE0002_RS08035GCF_000160895#BCERE0002_RS08035
HKClassic
1 514 111-1 515 211 nt · Reverse (-)
BCERE0002_RS08040GCF_000160895#BCERE0002_RS08040
RRNarLCurrent focus
1 515 216-1 515 854 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160895#BCERE0002_RS08040The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1986121
Simplified PFAM architecture for RROC_1986121
PFAM domain coverage: 167 / 212 aa (78.8%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[151-205]
- Domain count: 2
- Matched identifier: RROC_1986121
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 151-205 ; GerE 151-205
Cluster members and taxonomy
Representative gene: GCF_000160895#BCERE0002_RS08040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 980 · GCF_000160895
AssemblyASM16089v1 · Chromosomehaploid
Genome composition5 939 023 bp · 35,0% GCBacillus cereus ATCC 10876
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key