1 Response_reg#1
3-113 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:3:1.03e-34:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0345_RS17070
Response regulator OmpR family
Enterococcus faecalis ATCC 29200 · GCF_000159655
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000159655#HMPREF0345_RS17070Stable P2CS identifier used across views.
GenomeGCF_000159655Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:150:4.56e-31:226:77:77- Raw architecture: Response_reg:3:1.03e-34:113:112:111#Trans_reg_C:150:4.56e-31:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000159655::NZ_GG668758.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span260898-262758Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0345_2956RefSeq proteinWP_002355963.1
Context group ID
GCF_000159655::NZ_GG668758.1::G00002Context members
HMPREF0345_RS17065HMPREF0345_RS17070
Partner locus tags
HMPREF0345_RS17065HMPREF0345_RS17070
Partner old locus tags
HMPREF0345_2955HMPREF0345_2956
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002355963.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TKC7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TKC7_ENTFLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0345_RS17070Primary locus identifier stored in the genes table.
Old locus tagHMPREF0345_2956Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG668758.1Sequence record reported by the local genomic context database.
Genomic interval262 069-262 758 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span260 898-262 758 ntGCF_000159655::NZ_GG668758.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000159655::NZ_GG668758.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG668758.1All displayed genes belong to this local TCS context.
Neighborhood span260 898-262 758 nt1 861 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
260 898 nt262 758 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0345_RS17065GCF_000159655#HMPREF0345_RS17065
HKClassic
260 898-262 079 nt · Reverse (-)
HMPREF0345_RS17070GCF_000159655#HMPREF0345_RS17070
RROmpRCurrent focus
262 069-262 758 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS15580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246135
Simplified PFAM architecture for RROC_1246135
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1246135
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS15580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 271 · GCF_000159655
AssemblyASM15965v1 · Scaffoldhaploid
Genome composition2 973 369 bp · 37,5% GCEnterococcus faecalis ATCC 29200
Signal transduction countsGenes 26 · HK 12 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key