1 HAMP#1
195-266 aa · 72 aa · 14.5% of protein
Raw token
HAMP:195:0.00000000000821:266:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0348_RS14855
Histidine kinase, Classic
Enterococcus faecalis TX0104 · GCF_000159255
ClassHKTypeClassicLength497 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000159255#HMPREF0348_RS14855Stable P2CS identifier used across views.
GenomeGCF_000159255Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length497 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 497 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa497 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-336 aa · 67 aa · 13.5% of protein
Raw token
HisKA:270:0.00000000000000847:336:67:643 HATPase_c#3
384-493 aa · 110 aa · 22.1% of protein
Raw token
HATPase_c:384:1.22e-29:493:110:109- Raw architecture: HAMP:195:0.00000000000821:266:72:69#HisKA:270:0.00000000000000847:336:67:64#HATPase_c:384:1.22e-29:493:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000159255::NZ_GG668927.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span164493-166681Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0348_0958RefSeq proteinWP_002383447.1
Context group ID
GCF_000159255::NZ_GG668927.1::G00007Context members
HMPREF0348_RS14850HMPREF0348_RS14855
Partner locus tags
HMPREF0348_RS14850HMPREF0348_RS14855
Partner old locus tags
HMPREF0348_0957HMPREF0348_0958
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002383447.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0348_RS14855Primary locus identifier stored in the genes table.
Old locus tagHMPREF0348_0958Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG668927.1Sequence record reported by the local genomic context database.
Genomic interval165 190-166 681 nt1 492 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span164 493-166 681 ntGCF_000159255::NZ_GG668927.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000159255::NZ_GG668927.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG668927.1All displayed genes belong to this local TCS context.
Neighborhood span164 493-166 681 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
164 493 nt166 681 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0348_RS14850GCF_000159255#HMPREF0348_RS14850
RROmpR
164 493-165 179 nt · Forward (+)
HMPREF0348_RS14855GCF_000159255#HMPREF0348_RS14855
HKClassicCurrent focus
165 190-166 681 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000294225#HMPREF1339_RS13315Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1397004
Simplified PFAM architecture for HKOC_1397004
PFAM domain coverage: 372 / 518 aa (71.8%)
1 aa518 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[45-189] | HAMP[213-265] | HisKA[271-336] | HATPase_c[385-492]
- Domain count: 4
- Matched identifier: HKOC_1397004
- Positioned domains: ArlS_N 45-189 ; HAMP 213-265 ; HisKA 271-336 ; HATPase_c 385-492
Cluster members and taxonomy
Representative gene: GCF_000294225#HMPREF1339_RS13315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 491 074 · GCF_000159255
AssemblyASM15925v1 · Scaffoldhaploid
Genome composition3 156 478 bp · 37,5% GCEnterococcus faecalis TX0104
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key