1 sCache_like#1
36-155 aa · 120 aa · 20.5% of protein
Raw token
sCache_like:36:0.000000000292:155:121:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0348_RS06805
Histidine kinase, Classic
Enterococcus faecalis TX0104 · GCF_000159255
ClassHKTypeClassicLength584 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000159255#HMPREF0348_RS06805Stable P2CS identifier used across views.
GenomeGCF_000159255Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_4HisKAHATPase_c
Protein length584 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage391 / 584 aa (67.0%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa584 aa
Domain-by-domain annotation4 items
2 PAS_4#2
256-361 aa · 106 aa · 18.2% of protein
Raw token
PAS_4:256:0.00000000299:361:111:1103 HisKA#3
365-428 aa · 64 aa · 11.0% of protein
Raw token
HisKA:365:5.16e-16:428:64:644 HATPase_c#4
484-584 aa · 101 aa · 17.3% of protein
Raw token
HATPase_c:484:4.57e-30:584:101:109- Raw architecture: sCache_like:36:0.000000000292:155:121:114#PAS_4:256:0.00000000299:361:111:110#HisKA:365:5.16e-16:428:64:64#HATPase_c:484:4.57e-30:584:101:109
- Domain description: 1 sCache_like,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000159255::NZ_GG668922.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span588631-591089Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0348_1876RefSeq proteinWP_002382378.1
Context group ID
GCF_000159255::NZ_GG668922.1::G00017Context members
HMPREF0348_RS06800HMPREF0348_RS06805
Partner locus tags
HMPREF0348_RS06800HMPREF0348_RS06805
Partner old locus tags
HMPREF0348_1875HMPREF0348_1876
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002382378.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0348_RS06805Primary locus identifier stored in the genes table.
Old locus tagHMPREF0348_1876Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG668922.1Sequence record reported by the local genomic context database.
Genomic interval589 338-591 089 nt1 752 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span588 631-591 089 ntGCF_000159255::NZ_GG668922.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000159255::NZ_GG668922.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG668922.1All displayed genes belong to this local TCS context.
Neighborhood span588 631-591 089 nt2 459 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
588 631 nt591 089 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0348_RS06800GCF_000159255#HMPREF0348_RS06800
RROmpR
588 631-589 341 nt · Forward (+)
HMPREF0348_RS06805GCF_000159255#HMPREF0348_RS06805
HKClassicCurrent focus
589 338-591 089 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006541755#FKY90_RS01270Use this link to inspect the representative gene detail.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1049056
Simplified PFAM architecture for HKOC_1049056
PFAM domain coverage: 276 / 601 aa (45.9%)
1 aa601 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[256-360] | HisKA[366-429] | HATPase_c[481-587]
- Domain count: 3
- Matched identifier: HKOC_1049056
- Positioned domains: PAS_4 256-360 ; HisKA 366-429 ; HATPase_c 481-587
Cluster members and taxonomy
Representative gene: GCF_006541755#FKY90_RS01270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 491 074 · GCF_000159255
AssemblyASM15925v1 · Scaffoldhaploid
Genome composition3 156 478 bp · 37,5% GCEnterococcus faecalis TX0104
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key