1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000219:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFBRE_RS05165
Histidine kinase, Classic
Bifidobacterium breve DSM 20213 = JCM 1192 · GCF_000158015
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000158015#BIFBRE_RS05165Stable P2CS identifier used across views.
GenomeGCF_000158015Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000867:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000219:278:64:68#HATPase_c:325:0.0000000867:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000158015::NZ_GG729830.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1090263-1092268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFBRE_03852RefSeq proteinWP_003829177.1
Context group ID
GCF_000158015::NZ_GG729830.1::G00013Context members
BIFBRE_RS05170BIFBRE_RS05165
Partner locus tags
BIFBRE_RS05170BIFBRE_RS05165
Partner old locus tags
BIFBRE_03851BIFBRE_03852
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829177.1Primary protein accession used for annex mappings.
UniProt accessionD4BP44Primary UniProt accession resolved in the annex database.
UniProt IDD4BP44_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFBRE_RS05165Primary locus identifier stored in the genes table.
Old locus tagBIFBRE_03852Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG729830.1Sequence record reported by the local genomic context database.
Genomic interval1 090 916-1 092 268 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 090 263-1 092 268 ntGCF_000158015::NZ_GG729830.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000158015::NZ_GG729830.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG729830.1All displayed genes belong to this local TCS context.
Neighborhood span1 090 263-1 092 268 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 090 263 nt1 092 268 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BIFBRE_RS05170GCF_000158015#BIFBRE_RS05170
RRNarL
1 090 263-1 090 916 nt · Reverse (-)
BIFBRE_RS05165GCF_000158015#BIFBRE_RS05165
HKClassicCurrent focus
1 090 916-1 092 268 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007525#BL_RS03045Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1962050
Simplified PFAM architecture for HKOC_1962050
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1962050
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_000007525#BL_RS03045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 518 634 · GCF_000158015
AssemblyASM15801v1 · Scaffoldhaploid
Genome composition2 331 386 bp · 58,5% GCBifidobacterium breve DSM 20213 = JCM 1192
Signal transduction countsGenes 27 · HK 10 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key