1 HisKA#1
87-144 aa · 58 aa · 19.5% of protein
Raw token
HisKA:87:0.0000000000000267:144:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFRG_RS17620
Histidine kinase, Classic
Enterococcus faecium 1,231,501 · GCF_000157555
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157555#EFRG_RS17620Stable P2CS identifier used across views.
GenomeGCF_000157555Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 298 aa (55.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
191-297 aa · 107 aa · 35.9% of protein
Raw token
HATPase_c:191:0.00000000000000119:297:114:109- Raw architecture: HisKA:87:0.0000000000000267:144:58:64#HATPase_c:191:0.00000000000000119:297:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157555::NZ_GG688441.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103704-105273Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFRG_02411RefSeq proteinWP_002307761.1
Context group ID
GCF_000157555::NZ_GG688441.1::G00004Context members
EFRG_RS17620EFRG_RS17625
Partner locus tags
EFRG_RS17620EFRG_RS17625
Partner old locus tags
EFRG_02411EFRG_02412
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002307761.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFRG_RS17620Primary locus identifier stored in the genes table.
Old locus tagEFRG_02411Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG688441.1Sequence record reported by the local genomic context database.
Genomic interval103 704-104 600 nt897 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 704-105 273 ntGCF_000157555::NZ_GG688441.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157555::NZ_GG688441.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG688441.1All displayed genes belong to this local TCS context.
Neighborhood span103 704-105 273 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 704 nt105 273 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFRG_RS17620GCF_000157555#EFRG_RS17620
HKClassicCurrent focus
103 704-104 600 nt · Reverse (-)
EFRG_RS17625GCF_000157555#EFRG_RS17625
RROmpR
104 593-105 273 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157555#EFRG_RS17620The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888638
Simplified PFAM architecture for HKOC_2888638
PFAM domain coverage: 159 / 298 aa (53.4%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-144] | HATPase_c[192-292]
- Domain count: 2
- Matched identifier: HKOC_2888638
- Positioned domains: HisKA 87-144 ; HATPase_c 192-292
Cluster members and taxonomy
Representative gene: GCF_000157555#EFRG_RS17620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 658 · GCF_000157555
AssemblyASM15755v1 · Scaffoldhaploid
Genome composition2 871 230 bp · 38,0% GCEnterococcus faecium 1,231,501
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key