1 HisKA_3#1
172-235 aa · 64 aa · 17.8% of protein
Raw token
HisKA_3:172:4.14e-16:235:66:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFRG_RS14130
Histidine kinase, Classic
Enterococcus faecium 1,231,501 · GCF_000157555
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157555#EFRG_RS14130Stable P2CS identifier used across views.
GenomeGCF_000157555Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 359 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
275-356 aa · 82 aa · 22.8% of protein
Raw token
HATPase_c:275:0.000000472:356:100:109- Raw architecture: HisKA_3:172:4.14e-16:235:66:68#HATPase_c:275:0.000000472:356:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157555::NZ_GG688438.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69692-71427Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFRG_01679RefSeq proteinWP_423201182.1
Context group ID
GCF_000157555::NZ_GG688438.1::G00007Context members
EFRG_RS14125EFRG_RS14130
Partner locus tags
EFRG_RS14125EFRG_RS14130
Partner old locus tags
EFRG_01678EFRG_01679
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_423201182.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFRG_RS14130Primary locus identifier stored in the genes table.
Old locus tagEFRG_01679Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG688438.1Sequence record reported by the local genomic context database.
Genomic interval70 318-71 427 nt1 110 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span69 692-71 427 ntGCF_000157555::NZ_GG688438.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157555::NZ_GG688438.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG688438.1All displayed genes belong to this local TCS context.
Neighborhood span69 692-71 427 nt1 736 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 692 nt71 427 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFRG_RS14125GCF_000157555#EFRG_RS14125
RRNarL
69 692-70 321 nt · Reverse (-)
EFRG_RS14130GCF_000157555#EFRG_RS14130
HKClassicCurrent focus
70 318-71 427 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157555#EFRG_RS14130The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c_52 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753022
Simplified PFAM architecture for HKOC_2753022
PFAM domain coverage: 150 / 359 aa (41.8%)
1 aa359 aa
HisKA_3HATPase_c_5
- Simplified architecture: HisKA_3 + HATPase_c_5
- Raw architecture: HisKA_3[172-235] | HATPase_c_5[269-354]
- Domain count: 2
- Matched identifier: HKOC_2753022
- Positioned domains: HisKA_3 172-235 ; HATPase_c_5 269-354
Cluster members and taxonomy
Representative gene: GCF_000157555#EFRG_RS14130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 658 · GCF_000157555
AssemblyASM15755v1 · Scaffoldhaploid
Genome composition2 871 230 bp · 38,0% GCEnterococcus faecium 1,231,501
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key