1 HAMP#1
179-244 aa · 66 aa · 13.7% of protein
Raw token
HAMP:179:0.000000000000447:244:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFQG_RS18200
Histidine kinase, Classic
Enterococcus faecium 1,231,502 · GCF_000157535
ClassHKTypeClassicLength482 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157535#EFQG_RS18200Stable P2CS identifier used across views.
GenomeGCF_000157535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length482 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 482 aa (50.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa482 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-321 aa · 67 aa · 13.9% of protein
Raw token
HisKA:255:0.00000000000000146:321:67:643 HATPase_c#3
366-475 aa · 110 aa · 22.8% of protein
Raw token
HATPase_c:366:6.3e-31:475:110:109- Raw architecture: HAMP:179:0.000000000000447:244:66:69#HisKA:255:0.00000000000000146:321:67:64#HATPase_c:366:6.3e-31:475:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157535::NZ_GG688495.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62792-64956Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFQG_02358RefSeq proteinWP_002288588.1
Context group ID
GCF_000157535::NZ_GG688495.1::G00005Context members
EFQG_RS18200EFQG_RS18205
Partner locus tags
EFQG_RS18200EFQG_RS18205
Partner old locus tags
EFQG_02358EFQG_02359
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002288588.1Primary protein accession used for annex mappings.
UniProt accessionQ3XZ23Primary UniProt accession resolved in the annex database.
UniProt IDQ3XZ23_ENTFDDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFQG_RS18200Primary locus identifier stored in the genes table.
Old locus tagEFQG_02358Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG688495.1Sequence record reported by the local genomic context database.
Genomic interval62 792-64 240 nt1 449 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span62 792-64 956 ntGCF_000157535::NZ_GG688495.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157535::NZ_GG688495.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG688495.1All displayed genes belong to this local TCS context.
Neighborhood span62 792-64 956 nt2 165 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 792 nt64 956 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFQG_RS18200GCF_000157535#EFQG_RS18200
HKClassicCurrent focus
62 792-64 240 nt · Reverse (-)
EFQG_RS18205GCF_000157535#EFQG_RS18205
RROmpR
64 240-64 956 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157435#EFPG_RS03405Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1549839
Simplified PFAM architecture for HKOC_1549839
PFAM domain coverage: 225 / 488 aa (46.1%)
1 aa488 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-243] | HisKA[256-320] | HATPase_c[367-476]
- Domain count: 3
- Matched identifier: HKOC_1549839
- Positioned domains: HAMP 194-243 ; HisKA 256-320 ; HATPase_c 367-476
Cluster members and taxonomy
Representative gene: GCF_000157435#EFPG_RS03405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 657 · GCF_000157535
AssemblyASM15753v1 · Scaffoldhaploid
Genome composition3 084 930 bp · 37,5% GCEnterococcus faecium 1,231,502
Signal transduction countsGenes 41 · HK 20 · RR 21CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key