1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:3.01e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFQG_RS13305
Response regulator OmpR family
Enterococcus faecium 1,231,502 · GCF_000157535
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157535#EFQG_RS13305Stable P2CS identifier used across views.
GenomeGCF_000157535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:152:5.56e-35:228:77:77- Raw architecture: Response_reg:4:3.01e-38:113:111:111#Trans_reg_C:152:5.56e-35:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157535::NZ_GG688489.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119816-122360Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFQG_01363RefSeq proteinWP_002288850.1
Context group ID
GCF_000157535::NZ_GG688489.1::G00015Context members
EFQG_RS13305EFQG_RS13310
Partner locus tags
EFQG_RS13305EFQG_RS13310
Partner old locus tags
EFQG_01363EFQG_01364
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002288850.1Primary protein accession used for annex mappings.
UniProt accessionA0A829F7H7Primary UniProt accession resolved in the annex database.
UniProt IDA0A829F7H7_ENTFCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFQG_RS13305Primary locus identifier stored in the genes table.
Old locus tagEFQG_01363Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG688489.1Sequence record reported by the local genomic context database.
Genomic interval119 816-120 520 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 816-122 360 ntGCF_000157535::NZ_GG688489.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157535::NZ_GG688489.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG688489.1All displayed genes belong to this local TCS context.
Neighborhood span119 816-122 360 nt2 545 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 816 nt122 360 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFQG_RS13305GCF_000157535#EFQG_RS13305
RROmpRCurrent focus
119 816-120 520 nt · Forward (+)
EFQG_RS13310GCF_000157535#EFQG_RS13310
HKClassic
120 525-122 360 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS11940Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047357
Simplified PFAM architecture for RROC_1047357
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1047357
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS11940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 657 · GCF_000157535
AssemblyASM15753v1 · Scaffoldhaploid
Genome composition3 084 930 bp · 37,5% GCEnterococcus faecium 1,231,502
Signal transduction countsGenes 41 · HK 20 · RR 21CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key