1 Response_reg#1
5-113 aa · 109 aa · 48.7% of protein
Raw token
Response_reg:5:1.22e-31:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFQG_RS06920
Response regulator OmpR family
Enterococcus faecium 1,231,502 · GCF_000157535
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157535#EFQG_RS06920Stable P2CS identifier used across views.
GenomeGCF_000157535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:147:3.03e-23:221:76:77- Raw architecture: Response_reg:5:1.22e-31:113:110:111#Trans_reg_C:147:3.03e-23:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157535::NZ_GG688486.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81974-83937Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFQG_00082RefSeq proteinWP_002286063.1
Context group ID
GCF_000157535::NZ_GG688486.1::G00021Context members
EFQG_RS06915EFQG_RS06920
Partner locus tags
EFQG_RS06915EFQG_RS06920
Partner old locus tags
EFQG_00081EFQG_00082
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002286063.1Primary protein accession used for annex mappings.
UniProt accessionQ3Y3C6Primary UniProt accession resolved in the annex database.
UniProt IDQ3Y3C6_ENTFDDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFQG_RS06920Primary locus identifier stored in the genes table.
Old locus tagEFQG_00082Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG688486.1Sequence record reported by the local genomic context database.
Genomic interval83 263-83 937 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 974-83 937 ntGCF_000157535::NZ_GG688486.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157535::NZ_GG688486.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG688486.1All displayed genes belong to this local TCS context.
Neighborhood span81 974-83 937 nt1 964 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 974 nt83 937 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFQG_RS06915GCF_000157535#EFQG_RS06915
HKClassic
81 974-83 258 nt · Reverse (-)
EFQG_RS06920GCF_000157535#EFQG_RS06920
RROmpRCurrent focus
83 263-83 937 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS07860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529006
Simplified PFAM architecture for RROC_1529006
PFAM domain coverage: 182 / 224 aa (81.3%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1529006
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS07860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 657 · GCF_000157535
AssemblyASM15753v1 · Scaffoldhaploid
Genome composition3 084 930 bp · 37,5% GCEnterococcus faecium 1,231,502
Signal transduction countsGenes 41 · HK 20 · RR 21CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key