1 HAMP#1
130-208 aa · 79 aa · 17.7% of protein
Raw token
HAMP:130:0.000000227:208:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFNG_RS06555
Histidine kinase, Classic
Enterococcus faecalis CH188 · GCF_000157495
ClassHKTypeClassicLength447 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157495#EFNG_RS06555Stable P2CS identifier used across views.
GenomeGCF_000157495Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length447 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 447 aa (57.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa447 aa
Domain-by-domain annotation3 items
2 HisKA#2
220-284 aa · 65 aa · 14.5% of protein
Raw token
HisKA:220:0.0000000000000102:284:65:643 HATPase_c#3
329-442 aa · 114 aa · 25.5% of protein
Raw token
HATPase_c:329:6.84e-33:442:114:109- Raw architecture: HAMP:130:0.000000227:208:79:69#HisKA:220:0.0000000000000102:284:65:64#HATPase_c:329:6.84e-33:442:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157495::NZ_GG688660.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85480-87512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFNG_01562RefSeq proteinWP_002385380.1
Context group ID
GCF_000157495::NZ_GG688660.1::G00012Context members
EFNG_RS06550EFNG_RS06555
Partner locus tags
EFNG_RS06550EFNG_RS06555
Partner old locus tags
EFNG_01561EFNG_01562
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002385380.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TGX6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TGX6_ENTFLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFNG_RS06555Primary locus identifier stored in the genes table.
Old locus tagEFNG_01562Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG688660.1Sequence record reported by the local genomic context database.
Genomic interval86 169-87 512 nt1 344 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span85 480-87 512 ntGCF_000157495::NZ_GG688660.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157495::NZ_GG688660.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG688660.1All displayed genes belong to this local TCS context.
Neighborhood span85 480-87 512 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 480 nt87 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFNG_RS06550GCF_000157495#EFNG_RS06550
RROmpR
85 480-86 172 nt · Reverse (-)
EFNG_RS06555GCF_000157495#EFNG_RS06555
HKClassicCurrent focus
86 169-87 512 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS01865Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1999462
Simplified PFAM architecture for HKOC_1999462
PFAM domain coverage: 178 / 447 aa (39.8%)
1 aa447 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[220-284] | HATPase_c[330-442]
- Domain count: 2
- Matched identifier: HKOC_1999462
- Positioned domains: HisKA 220-284 ; HATPase_c 330-442
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS01865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 644 · GCF_000157495
AssemblyASM15749v1 · Scaffoldhaploid
Genome composition3 220 345 bp · 37,0% GCEnterococcus faecalis CH188
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key